Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT39Q6A163 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.16■■□□□ 1.3
KRT39Q6A163 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT39Q6A163 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT39Q6A163 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.15■■□□□ 1.3
KRT39Q6A163 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.15■■□□□ 1.3
KRT39Q6A163 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT39Q6A163 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.15■■□□□ 1.3
KRT39Q6A163 AL354811.1-201ENST00000610286 706 ntBASIC23.15■■□□□ 1.3
KRT39Q6A163 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.15■■□□□ 1.3
KRT39Q6A163 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT39Q6A163 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.15■■□□□ 1.3
KRT39Q6A163 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT39Q6A163 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT39Q6A163 AC009237.3-201ENST00000393279 1427 ntBASIC23.15■■□□□ 1.3
KRT39Q6A163 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
KRT39Q6A163 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.14■■□□□ 1.3
KRT39Q6A163 AP006587.3-201ENST00000525742 1516 ntBASIC23.14■■□□□ 1.3
KRT39Q6A163 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
KRT39Q6A163 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT39Q6A163 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
KRT39Q6A163 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC23.14■■□□□ 1.29
KRT39Q6A163 AL358852.1-201ENST00000623174 1268 ntBASIC23.14■■□□□ 1.29
KRT39Q6A163 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT39Q6A163 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
KRT39Q6A163 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
KRT39Q6A163 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
KRT39Q6A163 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT39Q6A163 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.13■■□□□ 1.29
KRT39Q6A163 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT39Q6A163 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
KRT39Q6A163 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT39Q6A163 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
KRT39Q6A163 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.13■■□□□ 1.29
KRT39Q6A163 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.13■■□□□ 1.29
KRT39Q6A163 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.13■■□□□ 1.29
KRT39Q6A163 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.13■■□□□ 1.29
KRT39Q6A163 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.13■■□□□ 1.29
KRT39Q6A163 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
KRT39Q6A163 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
KRT39Q6A163 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.12■■□□□ 1.29
KRT39Q6A163 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC23.12■■□□□ 1.29
KRT39Q6A163 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT39Q6A163 PXK-203ENST00000383715 1756 ntTSL 5 BASIC23.12■■□□□ 1.29
KRT39Q6A163 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT39Q6A163 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT39Q6A163 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
KRT39Q6A163 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
KRT39Q6A163 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
KRT39Q6A163 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
KRT39Q6A163 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
KRT39Q6A163 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
KRT39Q6A163 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.12■■□□□ 1.29
KRT39Q6A163 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.12■■□□□ 1.29
KRT39Q6A163 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.11■■□□□ 1.29
KRT39Q6A163 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT39Q6A163 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
KRT39Q6A163 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.11■■□□□ 1.29
KRT39Q6A163 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.11■■□□□ 1.29
KRT39Q6A163 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
KRT39Q6A163 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT39Q6A163 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
KRT39Q6A163 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT39Q6A163 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT39Q6A163 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.11■■□□□ 1.29
KRT39Q6A163 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
KRT39Q6A163 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT39Q6A163 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
KRT39Q6A163 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT39Q6A163 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT39Q6A163 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
KRT39Q6A163 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT39Q6A163 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.1■■□□□ 1.29
KRT39Q6A163 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT39Q6A163 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT39Q6A163 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
KRT39Q6A163 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
KRT39Q6A163 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
KRT39Q6A163 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
KRT39Q6A163 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
KRT39Q6A163 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
KRT39Q6A163 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
KRT39Q6A163 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
KRT39Q6A163 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.09■■□□□ 1.29
KRT39Q6A163 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.09■■□□□ 1.29
KRT39Q6A163 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
KRT39Q6A163 AC005224.4-201ENST00000583262 1652 ntBASIC23.09■■□□□ 1.29
KRT39Q6A163 AC003102.1-202ENST00000563394 1796 ntBASIC23.09■■□□□ 1.29
KRT39Q6A163 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
KRT39Q6A163 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.08■■□□□ 1.29
KRT39Q6A163 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms