Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 AC006455.2-201ENST00000429931 906 ntBASIC16.29■□□□□ 0.2
HIST1H1AQ02539 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 AC099791.2-201ENST00000605725 427 ntBASIC16.29■□□□□ 0.2
HIST1H1AQ02539 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 SRD5A1P1-201ENST00000442297 786 ntBASIC16.28■□□□□ 0.2
HIST1H1AQ02539 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 MIR3621-201ENST00000580529 85 ntBASIC16.28■□□□□ 0.2
HIST1H1AQ02539 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 AC133637.1-201ENST00000624115 1537 ntBASIC16.28■□□□□ 0.2
HIST1H1AQ02539 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC16.28■□□□□ 0.2
HIST1H1AQ02539 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
HIST1H1AQ02539 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
HIST1H1AQ02539 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HIST1H1AQ02539 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC16.27■□□□□ 0.2
HIST1H1AQ02539 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
HIST1H1AQ02539 GATM-206ENST00000558336 1522 ntTSL 2 BASIC16.27■□□□□ 0.2
HIST1H1AQ02539 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
HIST1H1AQ02539 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HIST1H1AQ02539 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HIST1H1AQ02539 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HIST1H1AQ02539 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HIST1H1AQ02539 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.27■□□□□ 0.19
HIST1H1AQ02539 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
HIST1H1AQ02539 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
HIST1H1AQ02539 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 GTSE1-AS1-202ENST00000623117 1518 ntBASIC16.26■□□□□ 0.19
HIST1H1AQ02539 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HIST1H1AQ02539 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 AL356441.2-201ENST00000443009 864 ntBASIC16.25■□□□□ 0.19
HIST1H1AQ02539 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 CA15P2-201ENST00000611168 834 ntBASIC16.25■□□□□ 0.19
HIST1H1AQ02539 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HIST1H1AQ02539 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 SRR-208ENST00000576848 588 ntTSL 4 BASIC16.24■□□□□ 0.19
HIST1H1AQ02539 AC092171.4-201ENST00000609130 632 ntBASIC16.24■□□□□ 0.19
HIST1H1AQ02539 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms