Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CL1P78423 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.2■□□□□ 0.34
CX3CL1P78423 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.2■□□□□ 0.34
CX3CL1P78423 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.2■□□□□ 0.34
CX3CL1P78423 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.2■□□□□ 0.34
CX3CL1P78423 SUDS3P1-201ENST00000505831 966 ntBASIC17.2■□□□□ 0.34
CX3CL1P78423 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CL1P78423 AC005837.3-201ENST00000612163 286 ntBASIC17.2■□□□□ 0.34
CX3CL1P78423 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CL1P78423 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CL1P78423 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.2■□□□□ 0.34
CX3CL1P78423 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.19■□□□□ 0.34
CX3CL1P78423 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.19■□□□□ 0.34
CX3CL1P78423 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.19■□□□□ 0.34
CX3CL1P78423 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 IGHV3-19-201ENST00000521488 291 ntBASIC17.19■□□□□ 0.34
CX3CL1P78423 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.19■□□□□ 0.34
CX3CL1P78423 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CX3CL1P78423 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.19■□□□□ 0.34
CX3CL1P78423 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 AC092053.2-201ENST00000640557 1818 ntBASIC17.19■□□□□ 0.34
CX3CL1P78423 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CX3CL1P78423 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.18■□□□□ 0.34
CX3CL1P78423 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CL1P78423 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CL1P78423 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CL1P78423 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CX3CL1P78423 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CL1P78423 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CL1P78423 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CX3CL1P78423 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.18■□□□□ 0.34
CX3CL1P78423 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CX3CL1P78423 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CL1P78423 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.18■□□□□ 0.34
CX3CL1P78423 AC142381.2-201ENST00000566120 298 ntBASIC17.18■□□□□ 0.34
CX3CL1P78423 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CX3CL1P78423 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CL1P78423 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CX3CL1P78423 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CL1P78423 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CX3CL1P78423 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.18■□□□□ 0.34
CX3CL1P78423 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CX3CL1P78423 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 MIR638-201ENST00000385237 100 ntBASIC17.17■□□□□ 0.34
CX3CL1P78423 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 OR7E47P-201ENST00000546390 1422 ntBASIC17.17■□□□□ 0.34
CX3CL1P78423 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.17■□□□□ 0.34
CX3CL1P78423 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC17.17■□□□□ 0.34
CX3CL1P78423 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CX3CL1P78423 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CX3CL1P78423 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CX3CL1P78423 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.16■□□□□ 0.34
CX3CL1P78423 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CX3CL1P78423 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.16■□□□□ 0.34
CX3CL1P78423 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.16■□□□□ 0.34
CX3CL1P78423 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CX3CL1P78423 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.16■□□□□ 0.34
CX3CL1P78423 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CX3CL1P78423 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.16■□□□□ 0.34
CX3CL1P78423 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.16■□□□□ 0.34
CX3CL1P78423 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.16■□□□□ 0.34
CX3CL1P78423 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CX3CL1P78423 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CX3CL1P78423 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CX3CL1P78423 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CX3CL1P78423 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CX3CL1P78423 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.15■□□□□ 0.34
CX3CL1P78423 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CX3CL1P78423 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.15■□□□□ 0.34
CX3CL1P78423 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.15■□□□□ 0.34
CX3CL1P78423 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CX3CL1P78423 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CX3CL1P78423 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.15■□□□□ 0.34
CX3CL1P78423 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.15■□□□□ 0.34
CX3CL1P78423 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.15■□□□□ 0.34
CX3CL1P78423 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CX3CL1P78423 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CX3CL1P78423 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CX3CL1P78423 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CX3CL1P78423 TSPY26P-201ENST00000476365 1326 ntBASIC17.15■□□□□ 0.34
CX3CL1P78423 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CX3CL1P78423 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CX3CL1P78423 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.15■□□□□ 0.34
CX3CL1P78423 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CX3CL1P78423 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms