Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AC026185.1-201ENST00000445748 174 ntBASIC23.61■■□□□ 1.37
CLCN3P51790 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.61■■□□□ 1.37
CLCN3P51790 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.61■■□□□ 1.37
CLCN3P51790 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.61■■□□□ 1.37
CLCN3P51790 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLCN3P51790 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLCN3P51790 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CLCN3P51790 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CLCN3P51790 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.61■■□□□ 1.37
CLCN3P51790 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.6■■□□□ 1.37
CLCN3P51790 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.6■■□□□ 1.37
CLCN3P51790 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 AC080038.3-201ENST00000623346 1952 ntBASIC23.6■■□□□ 1.37
CLCN3P51790 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.6■■□□□ 1.37
CLCN3P51790 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC23.6■■□□□ 1.37
CLCN3P51790 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC23.6■■□□□ 1.37
CLCN3P51790 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CLCN3P51790 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.6■■□□□ 1.37
CLCN3P51790 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.6■■□□□ 1.37
CLCN3P51790 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
CLCN3P51790 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
CLCN3P51790 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC23.59■■□□□ 1.37
CLCN3P51790 AC010141.2-201ENST00000452426 721 ntBASIC23.59■■□□□ 1.37
CLCN3P51790 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.59■■□□□ 1.37
CLCN3P51790 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC23.59■■□□□ 1.37
CLCN3P51790 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.59■■□□□ 1.37
CLCN3P51790 AC138907.5-202ENST00000569484 235 ntBASIC23.59■■□□□ 1.37
CLCN3P51790 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.59■■□□□ 1.37
CLCN3P51790 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.59■■□□□ 1.37
CLCN3P51790 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.59■■□□□ 1.37
CLCN3P51790 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.59■■□□□ 1.37
CLCN3P51790 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CLCN3P51790 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CLCN3P51790 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.58■■□□□ 1.37
CLCN3P51790 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.58■■□□□ 1.37
CLCN3P51790 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC23.58■■□□□ 1.37
CLCN3P51790 HLA-L-209ENST00000420110 1011 ntBASIC23.58■■□□□ 1.37
CLCN3P51790 CROCCP5-201ENST00000436658 830 ntBASIC23.58■■□□□ 1.37
CLCN3P51790 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.58■■□□□ 1.37
CLCN3P51790 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CLCN3P51790 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CLCN3P51790 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
CLCN3P51790 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
CLCN3P51790 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
CLCN3P51790 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
CLCN3P51790 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
CLCN3P51790 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.57■■□□□ 1.36
CLCN3P51790 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
CLCN3P51790 MYCNOS-205ENST00000641950 531 ntBASIC23.57■■□□□ 1.36
CLCN3P51790 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN3P51790 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
CLCN3P51790 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CLCN3P51790 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.56■■□□□ 1.36
CLCN3P51790 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.56■■□□□ 1.36
CLCN3P51790 EEF1DP3-203ENST00000566025 782 ntBASIC23.56■■□□□ 1.36
CLCN3P51790 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.56■■□□□ 1.36
CLCN3P51790 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.56■■□□□ 1.36
CLCN3P51790 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CLCN3P51790 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.56■■□□□ 1.36
CLCN3P51790 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CLCN3P51790 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CLCN3P51790 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN3P51790 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.55■■□□□ 1.36
CLCN3P51790 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.55■■□□□ 1.36
CLCN3P51790 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN3P51790 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN3P51790 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC23.55■■□□□ 1.36
CLCN3P51790 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.55■■□□□ 1.36
CLCN3P51790 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.55■■□□□ 1.36
CLCN3P51790 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.55■■□□□ 1.36
CLCN3P51790 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.55■■□□□ 1.36
CLCN3P51790 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN3P51790 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC23.55■■□□□ 1.36
CLCN3P51790 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms