Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PXK-203ENST00000383715 1756 ntTSL 5 BASIC22.32■■□□□ 1.16
PTPN9P43378 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTPN9P43378 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PTPN9P43378 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTPN9P43378 AC005224.4-201ENST00000583262 1652 ntBASIC22.31■■□□□ 1.16
PTPN9P43378 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTPN9P43378 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTPN9P43378 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTPN9P43378 NME4-202ENST00000382940 766 ntTSL 3 BASIC22.31■■□□□ 1.16
PTPN9P43378 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PTPN9P43378 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC22.31■■□□□ 1.16
PTPN9P43378 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
PTPN9P43378 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC22.31■■□□□ 1.16
PTPN9P43378 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC22.31■■□□□ 1.16
PTPN9P43378 NME4-211ENST00000620944 1193 ntTSL 2 BASIC22.31■■□□□ 1.16
PTPN9P43378 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC22.3■■□□□ 1.16
PTPN9P43378 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTPN9P43378 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.3■■□□□ 1.16
PTPN9P43378 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTPN9P43378 AC055733.4-201ENST00000638462 1354 ntBASIC22.3■■□□□ 1.16
PTPN9P43378 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
PTPN9P43378 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTPN9P43378 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC22.3■■□□□ 1.16
PTPN9P43378 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC22.3■■□□□ 1.16
PTPN9P43378 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PTPN9P43378 TPRG1LP1-201ENST00000598702 760 ntBASIC22.3■■□□□ 1.16
PTPN9P43378 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTPN9P43378 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PTPN9P43378 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTPN9P43378 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTPN9P43378 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
PTPN9P43378 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTPN9P43378 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
PTPN9P43378 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.29■■□□□ 1.16
PTPN9P43378 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PTPN9P43378 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC22.29■■□□□ 1.16
PTPN9P43378 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTPN9P43378 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC22.28■■□□□ 1.16
PTPN9P43378 AC003102.1-202ENST00000563394 1796 ntBASIC22.28■■□□□ 1.16
PTPN9P43378 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.28■■□□□ 1.16
PTPN9P43378 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.28■■□□□ 1.16
PTPN9P43378 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTPN9P43378 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTPN9P43378 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
PTPN9P43378 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
PTPN9P43378 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTPN9P43378 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTPN9P43378 NT5C3AP1-201ENST00000394500 1012 ntBASIC22.28■■□□□ 1.16
PTPN9P43378 AC027612.3-201ENST00000413684 1047 ntBASIC22.28■■□□□ 1.16
PTPN9P43378 ZNRF2P3-201ENST00000424200 374 ntBASIC22.28■■□□□ 1.16
PTPN9P43378 MIR6084-201ENST00000622012 110 ntBASIC22.28■■□□□ 1.16
PTPN9P43378 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PTPN9P43378 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTPN9P43378 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTPN9P43378 ME2-206ENST00000638410 2289 ntTSL 5 BASIC22.28■■□□□ 1.16
PTPN9P43378 ME2-210ENST00000639255 2262 ntTSL 5 BASIC22.28■■□□□ 1.16
PTPN9P43378 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.28■■□□□ 1.16
PTPN9P43378 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC22.28■■□□□ 1.16
PTPN9P43378 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PTPN9P43378 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.27■■□□□ 1.16
PTPN9P43378 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.27■■□□□ 1.16
PTPN9P43378 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC22.27■■□□□ 1.16
PTPN9P43378 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PTPN9P43378 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC22.27■■□□□ 1.16
PTPN9P43378 AC104564.3-201ENST00000582367 638 ntBASIC22.27■■□□□ 1.16
PTPN9P43378 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
PTPN9P43378 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
PTPN9P43378 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC22.27■■□□□ 1.16
PTPN9P43378 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.27■■□□□ 1.16
PTPN9P43378 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC22.26■■□□□ 1.15
PTPN9P43378 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PTPN9P43378 AC244015.2-201ENST00000616358 1861 ntBASIC22.26■■□□□ 1.15
PTPN9P43378 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.26■■□□□ 1.15
PTPN9P43378 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.26■■□□□ 1.15
PTPN9P43378 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
PTPN9P43378 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC22.26■■□□□ 1.15
PTPN9P43378 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC22.26■■□□□ 1.15
PTPN9P43378 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PTPN9P43378 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PTPN9P43378 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC22.25■■□□□ 1.15
PTPN9P43378 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTPN9P43378 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PTPN9P43378 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTPN9P43378 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTPN9P43378 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTPN9P43378 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC22.25■■□□□ 1.15
PTPN9P43378 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC22.25■■□□□ 1.15
PTPN9P43378 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PTPN9P43378 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTPN9P43378 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PTPN9P43378 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms