Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CIITAP33076 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CIITAP33076 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CIITAP33076 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CIITAP33076 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC24.22■■□□□ 1.47
CIITAP33076 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CIITAP33076 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CIITAP33076 FXN-202ENST00000396364 980 ntTSL 5 BASIC24.22■■□□□ 1.47
CIITAP33076 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CIITAP33076 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC24.22■■□□□ 1.47
CIITAP33076 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.22■■□□□ 1.47
CIITAP33076 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CIITAP33076 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CIITAP33076 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
CIITAP33076 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
CIITAP33076 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC24.21■■□□□ 1.47
CIITAP33076 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC24.21■■□□□ 1.47
CIITAP33076 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CIITAP33076 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CIITAP33076 KRT87P-202ENST00000534226 1464 ntBASIC24.21■■□□□ 1.47
CIITAP33076 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CIITAP33076 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CIITAP33076 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
CIITAP33076 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CIITAP33076 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC24.21■■□□□ 1.47
CIITAP33076 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.21■■□□□ 1.47
CIITAP33076 LSR-203ENST00000360798 1963 ntTSL 2 BASIC24.21■■□□□ 1.47
CIITAP33076 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CIITAP33076 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC24.21■■□□□ 1.47
CIITAP33076 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CIITAP33076 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
CIITAP33076 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CIITAP33076 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
CIITAP33076 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
CIITAP33076 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CIITAP33076 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CIITAP33076 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CIITAP33076 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC24.2■■□□□ 1.46
CIITAP33076 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC24.2■■□□□ 1.46
CIITAP33076 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC24.2■■□□□ 1.46
CIITAP33076 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CIITAP33076 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.2■■□□□ 1.46
CIITAP33076 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC24.2■■□□□ 1.46
CIITAP33076 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CIITAP33076 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC24.2■■□□□ 1.46
CIITAP33076 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC24.2■■□□□ 1.46
CIITAP33076 AL117328.2-201ENST00000624617 1940 ntBASIC24.2■■□□□ 1.46
CIITAP33076 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.19■■□□□ 1.46
CIITAP33076 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC24.19■■□□□ 1.46
CIITAP33076 AC104564.3-201ENST00000582367 638 ntBASIC24.19■■□□□ 1.46
CIITAP33076 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.19■■□□□ 1.46
CIITAP33076 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
CIITAP33076 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC24.18■■□□□ 1.46
CIITAP33076 FAM99A-202ENST00000538190 1989 ntBASIC24.18■■□□□ 1.46
CIITAP33076 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CIITAP33076 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CIITAP33076 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CIITAP33076 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.18■■□□□ 1.46
CIITAP33076 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CIITAP33076 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
CIITAP33076 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
CIITAP33076 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CIITAP33076 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC24.17■■□□□ 1.46
CIITAP33076 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CIITAP33076 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.17■■□□□ 1.46
CIITAP33076 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.17■■□□□ 1.46
CIITAP33076 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
CIITAP33076 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC24.17■■□□□ 1.46
CIITAP33076 AC026471.6-201ENST00000622954 1905 ntBASIC24.17■■□□□ 1.46
CIITAP33076 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC24.16■■□□□ 1.46
CIITAP33076 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC24.16■■□□□ 1.46
CIITAP33076 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC24.16■■□□□ 1.46
CIITAP33076 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CIITAP33076 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CIITAP33076 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CIITAP33076 EEF1DP3-203ENST00000566025 782 ntBASIC24.16■■□□□ 1.46
CIITAP33076 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
CIITAP33076 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CIITAP33076 AC003102.1-202ENST00000563394 1796 ntBASIC24.16■■□□□ 1.46
CIITAP33076 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CIITAP33076 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CIITAP33076 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CIITAP33076 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CIITAP33076 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.15■■□□□ 1.46
CIITAP33076 AC022517.1-201ENST00000592429 346 ntBASIC24.15■■□□□ 1.46
CIITAP33076 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CIITAP33076 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
CIITAP33076 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CIITAP33076 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
CIITAP33076 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms