Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 NLE1-204ENST00000588019 1107 ntTSL 519.38■□□□□ 0.691e-8■■■□□ 18.9
YBX3P16989 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.17■□□□□ 0.51e-8■■■□□ 18.9
YBX3P16989 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.271e-8■■■□□ 18.9
YBX3P16989 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.396e-6■■■□□ 18.9
YBX3P16989 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.96e-6■■■□□ 18.9
YBX3P16989 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.656e-6■■■□□ 18.9
YBX3P16989 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC20.32■□□□□ 0.842e-11■■■□□ 18.9
YBX3P16989 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC17.04■□□□□ 0.322e-11■■■□□ 18.9
YBX3P16989 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.052e-11■■■□□ 18.9
YBX3P16989 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.266e-6■■■□□ 18.9
YBX3P16989 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.336e-6■■■□□ 18.9
YBX3P16989 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.166e-6■■■□□ 18.9
YBX3P16989 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC16.74■□□□□ 0.277e-6■■■□□ 18.9
YBX3P16989 BRCA1-222ENST00000493919 1948 ntTSL 213.92□□□□□ -0.187e-6■■■□□ 18.9
YBX3P16989 BRCA1-227ENST00000591849 563 ntTSL 1 (best) BASIC13.01□□□□□ -0.337e-6■■■□□ 18.9
YBX3P16989 BRCA1-226ENST00000591534 1282 ntTSL 1 (best) BASIC12.93□□□□□ -0.347e-6■■■□□ 18.9
YBX3P16989 BRCA1-219ENST00000491747 2379 ntTSL 5 BASIC12.04□□□□□ -0.487e-6■■■□□ 18.9
YBX3P16989 GLT8D1-202ENST00000394783 1621 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.696e-6■■■□□ 18.9
YBX3P16989 BRCA1-205ENST00000461221 5693 ntTSL 1 (best)9.08□□□□□ -0.967e-6■■■□□ 18.9
YBX3P16989 BRCA1-216ENST00000484087 1495 ntTSL 58.96□□□□□ -0.977e-6■■■□□ 18.9
YBX3P16989 BRCA1-215ENST00000478531 1972 ntTSL 1 (best)8.82□□□□□ -17e-6■■■□□ 18.9
YBX3P16989 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC7.88□□□□□ -1.157e-6■■■□□ 18.9
YBX3P16989 BRCA1-217ENST00000487825 800 ntTSL 57.44□□□□□ -1.227e-6■■■□□ 18.9
YBX3P16989 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.88□□□□□ -1.317e-6■■■□□ 18.9
YBX3P16989 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.13□□□□□ -2.077e-6■■■□□ 18.9
YBX3P16989 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.987e-7■■■□□ 18.9
YBX3P16989 AGBL5-208ENST00000477136 2165 ntTSL 225.5■■□□□ 1.671e-7■■■□□ 18.8
YBX3P16989 SLC35E1-210ENST00000600356 869 ntTSL 1 (best)23.41■■□□□ 1.345e-9■■■□□ 18.8
YBX3P16989 UPF1-204ENST00000596842 3825 ntTSL 215.48■□□□□ 0.071e-6■■■□□ 18.8
YBX3P16989 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.162e-6■■■□□ 18.8
YBX3P16989 MAN2B1-201ENST00000221363 3170 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.352e-6■■■□□ 18.8
YBX3P16989 MAN2B1-206ENST00000466794 3685 ntTSL 212.38□□□□□ -0.432e-6■■■□□ 18.8
YBX3P16989 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.135e-8■■■□□ 18.8
YBX3P16989 ANLN-213ENST00000495714 607 ntTSL 57.19□□□□□ -1.265e-8■■■□□ 18.8
YBX3P16989 ANLN-209ENST00000452877 580 ntTSL 46.76□□□□□ -1.335e-8■■■□□ 18.8
YBX3P16989 ANLN-207ENST00000441696 716 ntTSL 46.7□□□□□ -1.345e-8■■■□□ 18.8
YBX3P16989 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.59□□□□□ -1.355e-8■■■□□ 18.8
YBX3P16989 ANLN-206ENST00000429082 557 ntTSL 46.26□□□□□ -1.415e-8■■■□□ 18.8
YBX3P16989 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC26.42■■□□□ 1.825e-6■■■□□ 18.8
YBX3P16989 BLOC1S6-201ENST00000220531 4037 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.785e-6■■■□□ 18.8
YBX3P16989 BLOC1S6-218ENST00000568816 4013 ntTSL 2 BASIC9.73□□□□□ -0.855e-6■■■□□ 18.8
YBX3P16989 BLOC1S6-205ENST00000564310 636 ntTSL 37.47□□□□□ -1.215e-6■■■□□ 18.8
YBX3P16989 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC9.17□□□□□ -0.946e-7■■■□□ 18.8
YBX3P16989 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC8.39□□□□□ -1.076e-7■■■□□ 18.8
YBX3P16989 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC27.5■■□□□ 1.994e-8■■■□□ 18.8
YBX3P16989 DAP-202ENST00000432074 1048 ntTSL 2 BASIC24.64■■□□□ 1.545e-10■■■□□ 18.8
YBX3P16989 DAP-206ENST00000514882 562 ntTSL 413.77□□□□□ -0.212e-6■■■□□ 18.8
YBX3P16989 ROR2-205ENST00000495386 664 ntTSL 318.55■□□□□ 0.563e-8■■■□□ 18.8
YBX3P16989 ROR2-206ENST00000546883 501 ntTSL 317.44■□□□□ 0.383e-8■■■□□ 18.8
YBX3P16989 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.085e-6■■■□□ 18.8
YBX3P16989 KDM1B-202ENST00000449850 2045 ntTSL 514.07□□□□□ -0.165e-6■■■□□ 18.8
YBX3P16989 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC10.27□□□□□ -0.775e-6■■■□□ 18.8
YBX3P16989 ATP5G1-203ENST00000502964 679 ntTSL 212.99□□□□□ -0.335e-10■■■□□ 18.8
YBX3P16989 DCTN2-215ENST00000550201 1527 ntTSL 515.96■□□□□ 0.154e-7■■■□□ 18.8
YBX3P16989 DCTN2-212ENST00000549394 1439 ntTSL 215.09■□□□□ 0.014e-7■■■□□ 18.8
YBX3P16989 DCTN2-201ENST00000434715 1677 ntTSL 5 BASIC13.09□□□□□ -0.314e-7■■■□□ 18.8
YBX3P16989 DCTN2-202ENST00000543672 1321 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.494e-7■■■□□ 18.8
YBX3P16989 DCTN2-209ENST00000548249 2061 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.524e-7■■■□□ 18.8
YBX3P16989 KRT8-204ENST00000546826 1165 ntTSL 523.44■■□□□ 1.344e-12■■■□□ 18.8
YBX3P16989 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.36■■■□□ 2.134e-48■■■□□ 18.8
YBX3P16989 COX4I1-211ENST00000566405 490 ntTSL 514.38□□□□□ -0.114e-48■■■□□ 18.8
YBX3P16989 TYK2-218ENST00000531836 644 ntTSL 424.53■■□□□ 1.521e-7■■■□□ 18.8
YBX3P16989 TYK2-216ENST00000530829 720 ntTSL 524.43■■□□□ 1.51e-7■■■□□ 18.8
YBX3P16989 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.98□□□□□ -0.011e-7■■■□□ 18.8
YBX3P16989 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.181e-7■■■□□ 18.8
YBX3P16989 TYK2-202ENST00000524462 3456 ntTSL 1 (best) BASIC12.05□□□□□ -0.481e-7■■■□□ 18.8
YBX3P16989 TYK2-201ENST00000264818 3971 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.511e-7■■■□□ 18.8
YBX3P16989 ABHD14B-205ENST00000473912 477 ntTSL 216.29■□□□□ 0.24e-7■■■□□ 18.8
YBX3P16989 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.75■□□□□ 0.432e-6■■■□□ 18.7
YBX3P16989 ROR2-201ENST00000375708 4096 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.552e-6■■■□□ 18.7
YBX3P16989 ROR2-208ENST00000550066 4360 ntTSL 210.32□□□□□ -0.762e-6■■■□□ 18.7
YBX3P16989 PIN1-210ENST00000591777 533 ntTSL 316.73■□□□□ 0.273e-9■■■□□ 18.7
YBX3P16989 KIDINS220-209ENST00000489024 4084 ntTSL 59.58□□□□□ -0.882e-7■■■□□ 18.7
YBX3P16989 KIDINS220-202ENST00000319688 3765 ntTSL 1 (best) BASIC9.06□□□□□ -0.962e-7■■■□□ 18.7
YBX3P16989 KIDINS220-207ENST00000474782 748 ntTSL 37.33□□□□□ -1.242e-7■■■□□ 18.7
YBX3P16989 ORC2-201ENST00000234296 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.715e-7■■■□□ 18.7
YBX3P16989 LMBR1-211ENST00000444719 762 ntTSL 329.46■■■□□ 2.313e-7■■■□□ 18.7
YBX3P16989 LMBR1-205ENST00000430278 523 ntTSL 428.67■■■□□ 2.183e-7■■■□□ 18.7
YBX3P16989 LMBR1-208ENST00000434278 678 ntTSL 526.88■■□□□ 1.893e-7■■■□□ 18.7
YBX3P16989 ANKRD27-204ENST00000587352 3301 ntTSL 1 (best) BASIC13.4□□□□□ -0.265e-7■■■□□ 18.7
YBX3P16989 ANKRD27-201ENST00000306065 4450 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.035e-7■■■□□ 18.7
YBX3P16989 ANKRD27-208ENST00000591100 628 ntTSL 56.71□□□□□ -1.345e-7■■■□□ 18.7
YBX3P16989 PPHLN1-202ENST00000317560 1359 ntTSL 2 BASIC7.99□□□□□ -1.138e-7■■■□□ 18.7
YBX3P16989 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.911e-10■■■□□ 18.7
YBX3P16989 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.711e-10■■■□□ 18.7
YBX3P16989 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC24.35■■□□□ 1.491e-10■■■□□ 18.7
YBX3P16989 METTL5-203ENST00000392640 800 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.271e-10■■■□□ 18.7
YBX3P16989 METTL5-212ENST00000538491 235 ntTSL 516.38■□□□□ 0.211e-10■■■□□ 18.7
YBX3P16989 METTL5-202ENST00000308099 629 ntTSL 3 BASIC11.63□□□□□ -0.551e-10■■■□□ 18.7
YBX3P16989 METTL5-204ENST00000409340 472 ntTSL 5 BASIC10.39□□□□□ -0.751e-10■■■□□ 18.7
YBX3P16989 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC8.14□□□□□ -1.111e-10■■■□□ 18.7
YBX3P16989 METTL5-211ENST00000537825 464 ntTSL 37.18□□□□□ -1.261e-10■■■□□ 18.7
YBX3P16989 TIMM8B-202ENST00000507614 741 ntTSL 322.34■■□□□ 1.175e-8■■■□□ 18.7
YBX3P16989 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.755e-8■■■□□ 18.7
YBX3P16989 TIMM8B-203ENST00000509359 1155 ntTSL 1 (best)13.5□□□□□ -0.255e-8■■■□□ 18.7
YBX3P16989 TIMM8B-204ENST00000541231 805 ntTSL 1 (best) BASIC13.5□□□□□ -0.255e-8■■■□□ 18.7
YBX3P16989 ATP5G1-208ENST00000513781 759 ntTSL 320.06■□□□□ 0.85e-10■■■□□ 18.7
YBX3P16989 ATP5G1-204ENST00000503641 539 ntTSL 3 BASIC15.42■□□□□ 0.065e-10■■■□□ 18.7
YBX3P16989 ATP5G1-206ENST00000506855 468 ntTSL 3 BASIC14.22□□□□□ -0.135e-10■■■□□ 18.7
YBX3P16989 ATP5G1-202ENST00000393366 614 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.25e-10■■■□□ 18.7
Retrieved 100 of 29,075 protein–RNA pairs in 276.8 ms