Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC4P09017 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
HOXC4P09017 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.02■□□□□ 0.96
HOXC4P09017 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC4P09017 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC4P09017 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC4P09017 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.02■□□□□ 0.96
HOXC4P09017 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.02■□□□□ 0.96
HOXC4P09017 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC4P09017 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
HOXC4P09017 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC4P09017 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.01■□□□□ 0.95
HOXC4P09017 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC4P09017 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.01■□□□□ 0.95
HOXC4P09017 C1orf229-201ENST00000623686 2258 ntBASIC21.01■□□□□ 0.95
HOXC4P09017 SLC7A5P1-201ENST00000568957 537 ntBASIC21.01■□□□□ 0.95
HOXC4P09017 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HOXC4P09017 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.01■□□□□ 0.95
HOXC4P09017 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.01■□□□□ 0.95
HOXC4P09017 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC4P09017 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC4P09017 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC4P09017 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21■□□□□ 0.95
HOXC4P09017 AC026185.1-201ENST00000445748 174 ntBASIC21■□□□□ 0.95
HOXC4P09017 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21■□□□□ 0.95
HOXC4P09017 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21■□□□□ 0.95
HOXC4P09017 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21■□□□□ 0.95
HOXC4P09017 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21■□□□□ 0.95
HOXC4P09017 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC4P09017 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC4P09017 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21■□□□□ 0.95
HOXC4P09017 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC4P09017 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
HOXC4P09017 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21■□□□□ 0.95
HOXC4P09017 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21■□□□□ 0.95
HOXC4P09017 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
HOXC4P09017 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.99■□□□□ 0.95
HOXC4P09017 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.99■□□□□ 0.95
HOXC4P09017 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC4P09017 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC4P09017 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC4P09017 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
HOXC4P09017 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC4P09017 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC4P09017 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.99■□□□□ 0.95
HOXC4P09017 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.99■□□□□ 0.95
HOXC4P09017 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.99■□□□□ 0.95
HOXC4P09017 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC4P09017 MFSD11-216ENST00000590393 1141 ntBASIC20.99■□□□□ 0.95
HOXC4P09017 UBE2DNL-204ENST00000602536 740 ntBASIC20.99■□□□□ 0.95
HOXC4P09017 MYCNOS-205ENST00000641950 531 ntBASIC20.99■□□□□ 0.95
HOXC4P09017 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.99■□□□□ 0.95
HOXC4P09017 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HOXC4P09017 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.98■□□□□ 0.95
HOXC4P09017 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC4P09017 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC4P09017 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC4P09017 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC4P09017 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC4P09017 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HOXC4P09017 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC4P09017 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.98■□□□□ 0.95
HOXC4P09017 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC4P09017 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC4P09017 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC4P09017 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC4P09017 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HOXC4P09017 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.97■□□□□ 0.95
HOXC4P09017 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC4P09017 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.97■□□□□ 0.95
HOXC4P09017 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC4P09017 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC4P09017 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC4P09017 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC4P09017 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC4P09017 AC080038.3-201ENST00000623346 1952 ntBASIC20.96■□□□□ 0.95
HOXC4P09017 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC4P09017 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC4P09017 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC4P09017 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC4P09017 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC4P09017 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC4P09017 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC4P09017 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC4P09017 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC4P09017 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC4P09017 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC4P09017 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HOXC4P09017 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC4P09017 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC4P09017 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HOXC4P09017 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC4P09017 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC4P09017 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.95
HOXC4P09017 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC4P09017 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.95■□□□□ 0.94
HOXC4P09017 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC4P09017 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC4P09017 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC4P09017 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms