Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDGFBP01127 AC010980.2-201ENST00000587099 1412 ntBASIC21.8■■□□□ 1.08
PDGFBP01127 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PDGFBP01127 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDGFBP01127 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.79■■□□□ 1.08
PDGFBP01127 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
PDGFBP01127 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDGFBP01127 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.79■■□□□ 1.08
PDGFBP01127 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PDGFBP01127 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.79■■□□□ 1.08
PDGFBP01127 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.79■■□□□ 1.08
PDGFBP01127 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.79■■□□□ 1.08
PDGFBP01127 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDGFBP01127 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
PDGFBP01127 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.78■■□□□ 1.08
PDGFBP01127 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 MIR718-201ENST00000390190 70 ntBASIC21.78■■□□□ 1.08
PDGFBP01127 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
PDGFBP01127 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.78■■□□□ 1.08
PDGFBP01127 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.78■■□□□ 1.08
PDGFBP01127 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.78■■□□□ 1.08
PDGFBP01127 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.78■■□□□ 1.08
PDGFBP01127 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.78■■□□□ 1.08
PDGFBP01127 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDGFBP01127 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
PDGFBP01127 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PDGFBP01127 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PDGFBP01127 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.77■■□□□ 1.08
PDGFBP01127 SNORA78-201ENST00000459373 127 ntBASIC21.77■■□□□ 1.08
PDGFBP01127 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.77■■□□□ 1.08
PDGFBP01127 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.77■■□□□ 1.08
PDGFBP01127 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.77■■□□□ 1.08
PDGFBP01127 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PDGFBP01127 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PDGFBP01127 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
PDGFBP01127 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.07
PDGFBP01127 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
PDGFBP01127 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
PDGFBP01127 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.76■■□□□ 1.07
PDGFBP01127 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
PDGFBP01127 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PDGFBP01127 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.76■■□□□ 1.07
PDGFBP01127 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PDGFBP01127 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PDGFBP01127 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.76■■□□□ 1.07
PDGFBP01127 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PDGFBP01127 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.76■■□□□ 1.07
PDGFBP01127 Z99916.2-201ENST00000604037 246 ntBASIC21.76■■□□□ 1.07
PDGFBP01127 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PDGFBP01127 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PDGFBP01127 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PDGFBP01127 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PDGFBP01127 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
PDGFBP01127 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
PDGFBP01127 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PDGFBP01127 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PDGFBP01127 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PDGFBP01127 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.75■■□□□ 1.07
PDGFBP01127 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PDGFBP01127 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PDGFBP01127 AC008403.3-201ENST00000598924 454 ntBASIC21.75■■□□□ 1.07
PDGFBP01127 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PDGFBP01127 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PDGFBP01127 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
PDGFBP01127 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PDGFBP01127 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PDGFBP01127 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
PDGFBP01127 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.74■■□□□ 1.07
PDGFBP01127 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.74■■□□□ 1.07
PDGFBP01127 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
PDGFBP01127 FAM197Y4-202ENST00000622692 608 ntBASIC21.74■■□□□ 1.07
PDGFBP01127 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.74■■□□□ 1.07
PDGFBP01127 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDGFBP01127 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
PDGFBP01127 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.73■■□□□ 1.07
PDGFBP01127 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
PDGFBP01127 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PDGFBP01127 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.73■■□□□ 1.07
PDGFBP01127 RPPH1-201ENST00000516869 333 ntBASIC21.73■■□□□ 1.07
PDGFBP01127 EEF1DP3-203ENST00000566025 782 ntBASIC21.73■■□□□ 1.07
PDGFBP01127 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PDGFBP01127 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms