Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.343e-79■□□□□ 10.2
CDC40O60508 TCF3-210ENST00000587235 986 ntTSL 523.45■■□□□ 1.348e-7■□□□□ 10.2
CDC40O60508 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.04■□□□□ 0.88e-7■□□□□ 10.2
CDC40O60508 DDIT4-202ENST00000471240 521 ntTSL 219.89■□□□□ 0.778e-7■□□□□ 10.2
CDC40O60508 DDIT4-203ENST00000473155 753 ntTSL 1 (best)19.37■□□□□ 0.698e-7■□□□□ 10.2
CDC40O60508 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.658e-7■□□□□ 10.2
CDC40O60508 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.73■□□□□ 0.118e-7■□□□□ 10.2
CDC40O60508 TCF3-208ENST00000586318 631 ntTSL 315.13■□□□□ 0.018e-7■□□□□ 10.2
CDC40O60508 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.018e-7■□□□□ 10.2
CDC40O60508 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.368e-7■□□□□ 10.2
CDC40O60508 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.438e-7■□□□□ 10.2
CDC40O60508 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.448e-7■□□□□ 10.2
CDC40O60508 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC12.28□□□□□ -0.448e-7■□□□□ 10.2
CDC40O60508 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC12.16□□□□□ -0.468e-7■□□□□ 10.2
CDC40O60508 TCF7L2-223ENST00000629706 1755 ntTSL 1 (best) BASIC10.89□□□□□ -0.678e-7■□□□□ 10.2
CDC40O60508 SECISBP2-209ENST00000534113 3584 ntTSL 2 BASIC10.2□□□□□ -0.788e-7■□□□□ 10.2
CDC40O60508 SECISBP2-205ENST00000470305 5405 ntTSL 1 (best)9.14□□□□□ -0.958e-7■□□□□ 10.2
CDC40O60508 TCF7L2-205ENST00000355717 1979 ntTSL 1 (best) BASIC8.69□□□□□ -1.028e-7■□□□□ 10.2
CDC40O60508 TCF7L2-204ENST00000352065 1553 ntAPPRIS ALT1 TSL 1 (best) BASIC8.39□□□□□ -1.078e-7■□□□□ 10.2
CDC40O60508 NEMF-213ENST00000556925 3699 ntTSL 58.34□□□□□ -1.078e-7■□□□□ 10.2
CDC40O60508 HNRNPD-206ENST00000508119 735 ntTSL 28.27□□□□□ -1.098e-7■□□□□ 10.2
CDC40O60508 TCF7L2-221ENST00000545257 2160 ntTSL 1 (best) BASIC8.22□□□□□ -1.098e-7■□□□□ 10.2
CDC40O60508 TCF7L2-216ENST00000534894 3778 ntTSL 1 (best) BASIC7.91□□□□□ -1.148e-7■□□□□ 10.2
CDC40O60508 HNRNPD-211ENST00000514671 1089 ntTSL 57.91□□□□□ -1.148e-7■□□□□ 10.2
CDC40O60508 NEMF-215ENST00000557380 1742 ntTSL 1 (best)7.82□□□□□ -1.168e-7■□□□□ 10.2
CDC40O60508 TCF7L2-209ENST00000369395 1541 ntTSL 1 (best) BASIC7.27□□□□□ -1.258e-7■□□□□ 10.2
CDC40O60508 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.38e-7■□□□□ 10.2
CDC40O60508 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.328e-7■□□□□ 10.2
CDC40O60508 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC6.66□□□□□ -1.348e-7■□□□□ 10.2
CDC40O60508 NEMF-208ENST00000555970 3029 ntTSL 26.59□□□□□ -1.358e-7■□□□□ 10.2
CDC40O60508 TCF7L2-202ENST00000346198 667 ntTSL 36.26□□□□□ -1.418e-7■□□□□ 10.2
CDC40O60508 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.13□□□□□ -1.438e-7■□□□□ 10.2
CDC40O60508 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.458e-7■□□□□ 10.2
CDC40O60508 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.62□□□□□ -1.518e-7■□□□□ 10.2
CDC40O60508 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.59□□□□□ -1.518e-7■□□□□ 10.2
CDC40O60508 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.47□□□□□ -1.538e-7■□□□□ 10.2
CDC40O60508 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.36□□□□□ -1.558e-7■□□□□ 10.2
CDC40O60508 HNRNPD-210ENST00000514325 4597 ntTSL 1 (best)4.16□□□□□ -1.748e-7■□□□□ 10.2
CDC40O60508 SECISBP2-203ENST00000425851 826 ntTSL 32.23□□□□□ -2.058e-7■□□□□ 10.2
CDC40O60508 XRCC5-204ENST00000429133 576 ntTSL 413□□□□□ -0.333e-8■□□□□ 10.2
CDC40O60508 XRCC5-203ENST00000417391 605 ntTSL 39.42□□□□□ -0.93e-8■□□□□ 10.2
CDC40O60508 RBM5-208ENST00000441305 569 ntTSL 38.89□□□□□ -0.993e-9■□□□□ 10.2
CDC40O60508 XRCC5-208ENST00000476360 610 ntTSL 28.1□□□□□ -1.113e-8■□□□□ 10.2
CDC40O60508 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.45■□□□□ 0.223e-79■□□□□ 10.2
CDC40O60508 INS-IGF2-201ENST00000356578 1706 ntTSL 515.97■□□□□ 0.153e-79■□□□□ 10.2
CDC40O60508 DHRS2-206ENST00000556550 2595 nt12.81□□□□□ -0.363e-8■□□□□ 10.2
CDC40O60508 FUS-203ENST00000474990 827 ntTSL 321.13■□□□□ 0.971e-7■□□□□ 10.1
CDC40O60508 BSG-209ENST00000574970 570 ntTSL 420.09■□□□□ 0.811e-8■□□□□ 10.1
CDC40O60508 BSG-212ENST00000590218 545 ntTSL 217.67■□□□□ 0.421e-8■□□□□ 10.1
CDC40O60508 BSG-208ENST00000573784 559 ntTSL 417.62■□□□□ 0.411e-8■□□□□ 10.1
CDC40O60508 BSG-211ENST00000576984 544 ntTSL 417.29■□□□□ 0.361e-8■□□□□ 10.1
CDC40O60508 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.335e-7■□□□□ 10.1
CDC40O60508 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.31e-8■□□□□ 10.1
CDC40O60508 BSG-210ENST00000576925 611 ntTSL 215.89■□□□□ 0.131e-8■□□□□ 10.1
CDC40O60508 BSG-207ENST00000573216 545 ntTSL 415.89■□□□□ 0.131e-8■□□□□ 10.1
CDC40O60508 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.46■□□□□ 0.061e-8■□□□□ 10.1
CDC40O60508 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.38■□□□□ 0.051e-8■□□□□ 10.1
CDC40O60508 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.35■□□□□ 0.051e-8■□□□□ 10.1
CDC40O60508 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.16■□□□□ 0.021e-8■□□□□ 10.1
CDC40O60508 BSG-213ENST00000613627 689 ntTSL 314.43□□□□□ -0.11e-8■□□□□ 10.1
CDC40O60508 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.34□□□□□ -0.111e-8■□□□□ 10.1
CDC40O60508 BSG-206ENST00000572899 582 ntTSL 214.26□□□□□ -0.131e-8■□□□□ 10.1
CDC40O60508 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.11e-9■□□□□ 10.1
CDC40O60508 MYH9-201ENST00000216181 7501 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.641e-9■□□□□ 10.1
CDC40O60508 C9orf3-207ENST00000445181 873 ntTSL 321.98■■□□□ 1.113e-9■□□□□ 10.1
CDC40O60508 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.39■□□□□ 0.223e-9■□□□□ 10.1
CDC40O60508 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.82■□□□□ 0.123e-9■□□□□ 10.1
CDC40O60508 RBCK1-209ENST00000415942 2613 ntTSL 515.69■□□□□ 0.13e-9■□□□□ 10.1
CDC40O60508 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.093e-9■□□□□ 10.1
CDC40O60508 RBCK1-214ENST00000621487 473 ntTSL 215.02■□□□□ -03e-9■□□□□ 10.1
CDC40O60508 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.41□□□□□ -0.13e-9■□□□□ 10.1
CDC40O60508 RBCK1-204ENST00000382214 2752 ntTSL 1 (best)14.37□□□□□ -0.113e-9■□□□□ 10.1
CDC40O60508 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.073e-7■□□□□ 10.1
CDC40O60508 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC12.79□□□□□ -0.363e-7■□□□□ 10.1
CDC40O60508 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC12.39□□□□□ -0.433e-7■□□□□ 10.1
CDC40O60508 UBE2V1-207ENST00000420027 1956 ntTSL 5 BASIC11.72□□□□□ -0.533e-7■□□□□ 10.1
CDC40O60508 UBE2V1-203ENST00000371674 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.623e-7■□□□□ 10.1
CDC40O60508 UBE2V1-206ENST00000415862 2387 ntTSL 1 (best) BASIC9.7□□□□□ -0.863e-7■□□□□ 10.1
CDC40O60508 UBE2V1-217ENST00000486653 563 ntTSL 49.21□□□□□ -0.943e-7■□□□□ 10.1
CDC40O60508 UBE2V1-205ENST00000396059 1983 ntTSL 1 (best)7.93□□□□□ -1.143e-7■□□□□ 10.1
CDC40O60508 UBE2V1-223ENST00000617119 2432 ntTSL 4 BASIC7.91□□□□□ -1.143e-7■□□□□ 10.1
CDC40O60508 UBE2V1-204ENST00000371677 2459 ntTSL 2 BASIC7.51□□□□□ -1.213e-7■□□□□ 10.1
CDC40O60508 UBE2V1-202ENST00000371657 1973 ntTSL 4 BASIC6.93□□□□□ -1.33e-7■□□□□ 10.1
CDC40O60508 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC6.7□□□□□ -1.343e-7■□□□□ 10.1
CDC40O60508 UBE2V1-211ENST00000467839 566 ntTSL 26.4□□□□□ -1.383e-7■□□□□ 10.1
CDC40O60508 UBE2V1-221ENST00000493090 563 ntTSL 44.59□□□□□ -1.673e-7■□□□□ 10.1
CDC40O60508 UBE2V1-219ENST00000490555 549 ntTSL 44.4□□□□□ -1.713e-7■□□□□ 10.1
CDC40O60508 UBE2V1-216ENST00000483534 1155 ntTSL 1 (best)3.27□□□□□ -1.893e-7■□□□□ 10.1
CDC40O60508 UBE2V1-220ENST00000492371 535 ntTSL 31.85□□□□□ -2.113e-7■□□□□ 10.1
CDC40O60508 FUS-209ENST00000566605 1787 ntTSL 1 (best)23.62■■□□□ 1.379e-8■□□□□ 10.1
CDC40O60508 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.179e-8■□□□□ 10.1
CDC40O60508 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.859e-8■□□□□ 10.1
CDC40O60508 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.099e-8■□□□□ 10.1
CDC40O60508 FUS-206ENST00000487509 4920 ntTSL 213.72□□□□□ -0.219e-8■□□□□ 10.1
CDC40O60508 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.985e-6■□□□□ 10
CDC40O60508 CTDSPL-204ENST00000435525 371 ntTSL 315.03■□□□□ -05e-6■□□□□ 10
CDC40O60508 CTDSPL-201ENST00000273179 4459 ntAPPRIS P4 TSL 1 (best) BASIC8.8□□□□□ -15e-6■□□□□ 10
CDC40O60508 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.525e-8■□□□□ 10
CDC40O60508 PRR5-211ENST00000475850 1965 ntTSL 216.76■□□□□ 0.275e-8■□□□□ 10
CDC40O60508 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.215e-8■□□□□ 10
Retrieved 100 of 5,364 protein–RNA pairs in 29.5 ms