Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.28■□□□□ 0.84
PDLIM1O00151 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
PDLIM1O00151 TSPY9P-201ENST00000440215 945 ntBASIC20.28■□□□□ 0.84
PDLIM1O00151 TSPY11P-201ENST00000442607 1045 ntBASIC20.28■□□□□ 0.84
PDLIM1O00151 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
PDLIM1O00151 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.28■□□□□ 0.84
PDLIM1O00151 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
PDLIM1O00151 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.28■□□□□ 0.84
PDLIM1O00151 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.28■□□□□ 0.84
PDLIM1O00151 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.28■□□□□ 0.84
PDLIM1O00151 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.28■□□□□ 0.84
PDLIM1O00151 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.28■□□□□ 0.84
PDLIM1O00151 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.27■□□□□ 0.84
PDLIM1O00151 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM1O00151 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.27■□□□□ 0.84
PDLIM1O00151 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM1O00151 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.27■□□□□ 0.84
PDLIM1O00151 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
PDLIM1O00151 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.27■□□□□ 0.84
PDLIM1O00151 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.27■□□□□ 0.84
PDLIM1O00151 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM1O00151 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM1O00151 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.27■□□□□ 0.84
PDLIM1O00151 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.27■□□□□ 0.84
PDLIM1O00151 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.27■□□□□ 0.83
PDLIM1O00151 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PDLIM1O00151 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.26■□□□□ 0.83
PDLIM1O00151 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.26■□□□□ 0.83
PDLIM1O00151 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PDLIM1O00151 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PDLIM1O00151 MIR6722-201ENST00000617286 78 ntBASIC20.26■□□□□ 0.83
PDLIM1O00151 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.26■□□□□ 0.83
PDLIM1O00151 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM1O00151 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
PDLIM1O00151 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PDLIM1O00151 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
PDLIM1O00151 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PDLIM1O00151 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.25■□□□□ 0.83
PDLIM1O00151 MTDHP2-201ENST00000601468 714 ntBASIC20.25■□□□□ 0.83
PDLIM1O00151 AC010997.5-201ENST00000609182 354 ntBASIC20.25■□□□□ 0.83
PDLIM1O00151 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.25■□□□□ 0.83
PDLIM1O00151 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM1O00151 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM1O00151 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.24■□□□□ 0.83
PDLIM1O00151 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM1O00151 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.24■□□□□ 0.83
PDLIM1O00151 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM1O00151 KRT16P3-201ENST00000439127 1283 ntBASIC20.24■□□□□ 0.83
PDLIM1O00151 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.24■□□□□ 0.83
PDLIM1O00151 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.24■□□□□ 0.83
PDLIM1O00151 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.24■□□□□ 0.83
PDLIM1O00151 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM1O00151 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.24■□□□□ 0.83
PDLIM1O00151 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM1O00151 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM1O00151 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.24■□□□□ 0.83
PDLIM1O00151 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM1O00151 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM1O00151 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.23■□□□□ 0.83
PDLIM1O00151 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM1O00151 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.23■□□□□ 0.83
PDLIM1O00151 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PDLIM1O00151 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.23■□□□□ 0.83
PDLIM1O00151 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.23■□□□□ 0.83
PDLIM1O00151 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms