Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA2Q9Y261 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 AL139246.5-201ENST00000606645 996 ntBASIC17.34■□□□□ 0.37
FOXA2Q9Y261 AC110285.6-201ENST00000617652 491 ntBASIC17.34■□□□□ 0.37
FOXA2Q9Y261 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA2Q9Y261 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
FOXA2Q9Y261 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 AC079089.2-201ENST00000531211 1277 ntBASIC17.33■□□□□ 0.36
FOXA2Q9Y261 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 AC106739.1-201ENST00000617035 715 ntBASIC17.33■□□□□ 0.36
FOXA2Q9Y261 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA2Q9Y261 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 MIR4767-201ENST00000582827 78 ntBASIC17.32■□□□□ 0.36
FOXA2Q9Y261 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA2Q9Y261 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA2Q9Y261 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 PALM-208ENST00000592155 2272 ntTSL 4 BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 OR2I1P-207ENST00000453522 948 ntBASIC17.3■□□□□ 0.36
FOXA2Q9Y261 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA2Q9Y261 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms