Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
UPF3AQ9H1J1 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
UPF3AQ9H1J1 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
UPF3AQ9H1J1 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
UPF3AQ9H1J1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
UPF3AQ9H1J1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
UPF3AQ9H1J1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
UPF3AQ9H1J1 PREB-202ENST00000406567 1910 ntTSL 5 BASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 TERF1P5-201ENST00000477545 1207 ntBASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
UPF3AQ9H1J1 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 AC007322.4-201ENST00000509611 723 ntBASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 MARS-234ENST00000630571 216 ntTSL 5 BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 MARS-235ENST00000630803 183 ntTSL 3 BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 AC068338.2-201ENST00000563278 1430 ntBASIC24.01■■□□□ 1.43
UPF3AQ9H1J1 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC24■■□□□ 1.43
UPF3AQ9H1J1 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC24■■□□□ 1.43
UPF3AQ9H1J1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC24■■□□□ 1.43
UPF3AQ9H1J1 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24■■□□□ 1.43
UPF3AQ9H1J1 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 CYP2T1P-201ENST00000432607 1285 ntBASIC24■■□□□ 1.43
UPF3AQ9H1J1 FAM201B-201ENST00000458407 597 ntBASIC24■■□□□ 1.43
UPF3AQ9H1J1 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 AL034346.1-201ENST00000568244 1277 ntBASIC24■■□□□ 1.43
UPF3AQ9H1J1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC24■■□□□ 1.43
UPF3AQ9H1J1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC24■■□□□ 1.43
UPF3AQ9H1J1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
UPF3AQ9H1J1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 AC053503.5-201ENST00000601508 636 ntBASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 OR7E47P-201ENST00000546390 1422 ntBASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.99■■□□□ 1.43
UPF3AQ9H1J1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 MIR4758-201ENST00000577688 71 ntBASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
UPF3AQ9H1J1 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
UPF3AQ9H1J1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
UPF3AQ9H1J1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
UPF3AQ9H1J1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.97■■□□□ 1.43
UPF3AQ9H1J1 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
UPF3AQ9H1J1 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.97■■□□□ 1.43
UPF3AQ9H1J1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
UPF3AQ9H1J1 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
UPF3AQ9H1J1 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
UPF3AQ9H1J1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 LINC00526-201ENST00000581067 1875 ntBASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms