Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC26.98■■□□□ 1.91
USP44Q9H0E7 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC26.98■■□□□ 1.91
USP44Q9H0E7 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
USP44Q9H0E7 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC26.98■■□□□ 1.91
USP44Q9H0E7 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP44Q9H0E7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC26.98■■□□□ 1.91
USP44Q9H0E7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP44Q9H0E7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
USP44Q9H0E7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USP44Q9H0E7 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USP44Q9H0E7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC26.97■■□□□ 1.91
USP44Q9H0E7 ECEL1P1-201ENST00000373592 1742 ntBASIC26.97■■□□□ 1.91
USP44Q9H0E7 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC26.97■■□□□ 1.91
USP44Q9H0E7 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC26.97■■□□□ 1.91
USP44Q9H0E7 KRT18P5-201ENST00000436075 1291 ntBASIC26.97■■□□□ 1.91
USP44Q9H0E7 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
USP44Q9H0E7 AL034346.1-201ENST00000568244 1277 ntBASIC26.97■■□□□ 1.91
USP44Q9H0E7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC26.97■■□□□ 1.91
USP44Q9H0E7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC26.97■■□□□ 1.91
USP44Q9H0E7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USP44Q9H0E7 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC26.96■■□□□ 1.91
USP44Q9H0E7 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP44Q9H0E7 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC26.96■■□□□ 1.91
USP44Q9H0E7 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC26.96■■□□□ 1.91
USP44Q9H0E7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
USP44Q9H0E7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC26.96■■□□□ 1.91
USP44Q9H0E7 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
USP44Q9H0E7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC26.96■■□□□ 1.91
USP44Q9H0E7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC26.96■■□□□ 1.91
USP44Q9H0E7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
USP44Q9H0E7 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP44Q9H0E7 AP006587.3-201ENST00000525742 1516 ntBASIC26.95■■□□□ 1.91
USP44Q9H0E7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC26.95■■□□□ 1.91
USP44Q9H0E7 AC026471.6-201ENST00000622954 1905 ntBASIC26.95■■□□□ 1.9
USP44Q9H0E7 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
USP44Q9H0E7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC26.95■■□□□ 1.9
USP44Q9H0E7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
USP44Q9H0E7 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC26.95■■□□□ 1.9
USP44Q9H0E7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC26.95■■□□□ 1.9
USP44Q9H0E7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
USP44Q9H0E7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
USP44Q9H0E7 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USP44Q9H0E7 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USP44Q9H0E7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
USP44Q9H0E7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC26.94■■□□□ 1.9
USP44Q9H0E7 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC26.94■■□□□ 1.9
USP44Q9H0E7 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
USP44Q9H0E7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USP44Q9H0E7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC26.94■■□□□ 1.9
USP44Q9H0E7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC26.94■■□□□ 1.9
USP44Q9H0E7 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC26.94■■□□□ 1.9
USP44Q9H0E7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USP44Q9H0E7 AL117328.2-201ENST00000624617 1940 ntBASIC26.94■■□□□ 1.9
USP44Q9H0E7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC26.94■■□□□ 1.9
USP44Q9H0E7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC26.93■■□□□ 1.9
USP44Q9H0E7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC26.93■■□□□ 1.9
USP44Q9H0E7 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP44Q9H0E7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC26.93■■□□□ 1.9
USP44Q9H0E7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC26.93■■□□□ 1.9
USP44Q9H0E7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC26.93■■□□□ 1.9
USP44Q9H0E7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC26.93■■□□□ 1.9
USP44Q9H0E7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
USP44Q9H0E7 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP44Q9H0E7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
USP44Q9H0E7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP44Q9H0E7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
USP44Q9H0E7 AP004607.4-201ENST00000530158 1459 ntBASIC26.93■■□□□ 1.9
USP44Q9H0E7 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC26.93■■□□□ 1.9
USP44Q9H0E7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
USP44Q9H0E7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USP44Q9H0E7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC26.92■■□□□ 1.9
USP44Q9H0E7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USP44Q9H0E7 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC26.92■■□□□ 1.9
USP44Q9H0E7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC26.92■■□□□ 1.9
USP44Q9H0E7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USP44Q9H0E7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC26.92■■□□□ 1.9
USP44Q9H0E7 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC26.92■■□□□ 1.9
USP44Q9H0E7 NTF6G-201ENST00000591094 616 ntBASIC26.92■■□□□ 1.9
USP44Q9H0E7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USP44Q9H0E7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USP44Q9H0E7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
USP44Q9H0E7 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
USP44Q9H0E7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP44Q9H0E7 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP44Q9H0E7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP44Q9H0E7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP44Q9H0E7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP44Q9H0E7 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
USP44Q9H0E7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC26.91■■□□□ 1.9
USP44Q9H0E7 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC26.91■■□□□ 1.9
USP44Q9H0E7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
USP44Q9H0E7 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
USP44Q9H0E7 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
USP44Q9H0E7 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
USP44Q9H0E7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP44Q9H0E7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
USP44Q9H0E7 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC26.9■■□□□ 1.9
USP44Q9H0E7 AC004854.2-201ENST00000608450 1441 ntBASIC26.9■■□□□ 1.9
USP44Q9H0E7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
USP44Q9H0E7 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms