Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPNE1Q99829 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.45■■□□□ 1.02
CPNE1Q99829 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPNE1Q99829 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.45■■□□□ 1.02
CPNE1Q99829 AC010525.1-201ENST00000585559 441 ntBASIC21.45■■□□□ 1.02
CPNE1Q99829 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CPNE1Q99829 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPNE1Q99829 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.45■■□□□ 1.02
CPNE1Q99829 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPNE1Q99829 OXCT2P1-201ENST00000447263 1535 ntBASIC21.45■■□□□ 1.02
CPNE1Q99829 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.45■■□□□ 1.02
CPNE1Q99829 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPNE1Q99829 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.44■■□□□ 1.02
CPNE1Q99829 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CPNE1Q99829 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.44■■□□□ 1.02
CPNE1Q99829 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CPNE1Q99829 FEM1AP4-201ENST00000443167 1987 ntBASIC21.44■■□□□ 1.02
CPNE1Q99829 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPNE1Q99829 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPNE1Q99829 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPNE1Q99829 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.44■■□□□ 1.02
CPNE1Q99829 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.44■■□□□ 1.02
CPNE1Q99829 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPNE1Q99829 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPNE1Q99829 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPNE1Q99829 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPNE1Q99829 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CPNE1Q99829 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.43■■□□□ 1.02
CPNE1Q99829 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.43■■□□□ 1.02
CPNE1Q99829 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CPNE1Q99829 AL138724.1-201ENST00000606771 1088 ntBASIC21.43■■□□□ 1.02
CPNE1Q99829 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CPNE1Q99829 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.43■■□□□ 1.02
CPNE1Q99829 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CPNE1Q99829 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.43■■□□□ 1.02
CPNE1Q99829 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPNE1Q99829 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CPNE1Q99829 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.42■■□□□ 1.02
CPNE1Q99829 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.42■■□□□ 1.02
CPNE1Q99829 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPNE1Q99829 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPNE1Q99829 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CPNE1Q99829 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
CPNE1Q99829 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
CPNE1Q99829 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.42■■□□□ 1.02
CPNE1Q99829 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CPNE1Q99829 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.42■■□□□ 1.02
CPNE1Q99829 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CPNE1Q99829 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.42■■□□□ 1.02
CPNE1Q99829 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CPNE1Q99829 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.41■■□□□ 1.02
CPNE1Q99829 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPNE1Q99829 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
CPNE1Q99829 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CPNE1Q99829 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPNE1Q99829 DUX4L19-201ENST00000557448 1267 ntBASIC21.41■■□□□ 1.02
CPNE1Q99829 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.41■■□□□ 1.02
CPNE1Q99829 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
CPNE1Q99829 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.41■■□□□ 1.02
CPNE1Q99829 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPNE1Q99829 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.41■■□□□ 1.02
CPNE1Q99829 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.41■■□□□ 1.02
CPNE1Q99829 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPNE1Q99829 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CPNE1Q99829 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
CPNE1Q99829 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CPNE1Q99829 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPNE1Q99829 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.4■■□□□ 1.02
CPNE1Q99829 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPNE1Q99829 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CPNE1Q99829 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPNE1Q99829 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CPNE1Q99829 SERBP1P1-201ENST00000396021 1160 ntBASIC21.4■■□□□ 1.02
CPNE1Q99829 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.4■■□□□ 1.02
CPNE1Q99829 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.4■■□□□ 1.02
CPNE1Q99829 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.4■■□□□ 1.02
CPNE1Q99829 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CPNE1Q99829 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.4■■□□□ 1.02
CPNE1Q99829 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CPNE1Q99829 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CPNE1Q99829 SYT6-210ENST00000641643 1587 ntBASIC21.4■■□□□ 1.02
CPNE1Q99829 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CPNE1Q99829 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CPNE1Q99829 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.39■■□□□ 1.01
CPNE1Q99829 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CPNE1Q99829 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CPNE1Q99829 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CPNE1Q99829 AL034346.1-201ENST00000568244 1277 ntBASIC21.39■■□□□ 1.01
CPNE1Q99829 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
CPNE1Q99829 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CPNE1Q99829 AL024507.2-201ENST00000606070 2574 ntBASIC21.39■■□□□ 1.01
CPNE1Q99829 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.38■■□□□ 1.01
CPNE1Q99829 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.38■■□□□ 1.01
CPNE1Q99829 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CPNE1Q99829 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.38■■□□□ 1.01
CPNE1Q99829 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.38■■□□□ 1.01
CPNE1Q99829 AL356441.2-201ENST00000443009 864 ntBASIC21.38■■□□□ 1.01
CPNE1Q99829 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.38■■□□□ 1.01
CPNE1Q99829 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.38■■□□□ 1.01
CPNE1Q99829 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms