Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 RAP2CP1-201ENST00000605103 478 ntBASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 LSR-203ENST00000360798 1963 ntTSL 2 BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 GAS2L1P2-201ENST00000436355 1356 ntBASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC25.56■■□□□ 1.68
NKX2-3Q8TAU0 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 AC006015.1-201ENST00000429970 570 ntBASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 AC104771.1-201ENST00000603335 964 ntBASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NKX2-3Q8TAU0 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 AC012676.1-201ENST00000574705 1949 ntBASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NKX2-3Q8TAU0 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 AC026471.6-201ENST00000622954 1905 ntBASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 AC016769.1-201ENST00000409132 1010 ntBASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 CDCA4P2-201ENST00000441182 718 ntBASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 TPRG1LP1-201ENST00000598702 760 ntBASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC25.53■■□□□ 1.68
NKX2-3Q8TAU0 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 AC073111.5-205ENST00000641717 521 ntBASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
NKX2-3Q8TAU0 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
NKX2-3Q8TAU0 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 AC026185.1-201ENST00000445748 174 ntBASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 KRT18P61-201ENST00000585825 1298 ntBASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 AC087239.1-201ENST00000622671 572 ntBASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
NKX2-3Q8TAU0 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
NKX2-3Q8TAU0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
NKX2-3Q8TAU0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC25.5■■□□□ 1.67
NKX2-3Q8TAU0 NT5C3AP1-201ENST00000394500 1012 ntBASIC25.5■■□□□ 1.67
NKX2-3Q8TAU0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
NKX2-3Q8TAU0 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NKX2-3Q8TAU0 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC25.5■■□□□ 1.67
NKX2-3Q8TAU0 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
NKX2-3Q8TAU0 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 PPP1R14BP3-201ENST00000509033 445 ntBASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 AC066615.1-201ENST00000640911 628 ntBASIC25.49■■□□□ 1.67
NKX2-3Q8TAU0 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms