Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CLHC1Q8NHS4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.58■□□□□ 0.89
CLHC1Q8NHS4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.58■□□□□ 0.89
CLHC1Q8NHS4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLHC1Q8NHS4 OR7E47P-201ENST00000546390 1422 ntBASIC20.58■□□□□ 0.88
CLHC1Q8NHS4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 SERBP1P1-201ENST00000396021 1160 ntBASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CLHC1Q8NHS4 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 AC092171.4-201ENST00000609130 632 ntBASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLHC1Q8NHS4 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLHC1Q8NHS4 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLHC1Q8NHS4 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLHC1Q8NHS4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLHC1Q8NHS4 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CLHC1Q8NHS4 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.55■□□□□ 0.88
CLHC1Q8NHS4 SYT6-210ENST00000641643 1587 ntBASIC20.55■□□□□ 0.88
CLHC1Q8NHS4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 AC131281.2-201ENST00000520478 145 ntBASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLHC1Q8NHS4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.53■□□□□ 0.88
CLHC1Q8NHS4 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 Z98882.1-201ENST00000622160 2253 ntBASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 AC087239.1-201ENST00000622671 572 ntBASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLHC1Q8NHS4 AF106564.1-201ENST00000607058 2553 ntBASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms