Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 CD37-213ENST00000598095 1598 ntTSL 2 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 CIB2-204ENST00000557846 934 ntTSL 3 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CLRN3Q8NCR9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 ALDH1A3-203ENST00000557963 1670 ntBASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLRN3Q8NCR9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.1■□□□□ 0.33
CLRN3Q8NCR9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 AC120498.9-201ENST00000339021 3867 ntBASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 PCDHAC2-203ENST00000615316 3011 ntBASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 RPS2P35-201ENST00000443417 897 ntBASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLRN3Q8NCR9 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLRN3Q8NCR9 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLRN3Q8NCR9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLRN3Q8NCR9 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLRN3Q8NCR9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLRN3Q8NCR9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLRN3Q8NCR9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLRN3Q8NCR9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms