Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
USP43Q70EL4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.44■□□□□ 0.7
USP43Q70EL4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP43Q70EL4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP43Q70EL4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
USP43Q70EL4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP43Q70EL4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USP43Q70EL4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP43Q70EL4 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
USP43Q70EL4 FEM1AP4-201ENST00000443167 1987 ntBASIC19.43■□□□□ 0.7
USP43Q70EL4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP43Q70EL4 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
USP43Q70EL4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USP43Q70EL4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.43■□□□□ 0.7
USP43Q70EL4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.43■□□□□ 0.7
USP43Q70EL4 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.43■□□□□ 0.7
USP43Q70EL4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP43Q70EL4 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP43Q70EL4 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP43Q70EL4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP43Q70EL4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP43Q70EL4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
USP43Q70EL4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP43Q70EL4 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.42■□□□□ 0.7
USP43Q70EL4 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.42■□□□□ 0.7
USP43Q70EL4 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP43Q70EL4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP43Q70EL4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.42■□□□□ 0.7
USP43Q70EL4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP43Q70EL4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP43Q70EL4 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP43Q70EL4 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP43Q70EL4 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP43Q70EL4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP43Q70EL4 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.42■□□□□ 0.7
USP43Q70EL4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
USP43Q70EL4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.41■□□□□ 0.7
USP43Q70EL4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.41■□□□□ 0.7
USP43Q70EL4 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.41■□□□□ 0.7
USP43Q70EL4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
USP43Q70EL4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.41■□□□□ 0.7
USP43Q70EL4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP43Q70EL4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.41■□□□□ 0.7
USP43Q70EL4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP43Q70EL4 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP43Q70EL4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP43Q70EL4 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP43Q70EL4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USP43Q70EL4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
USP43Q70EL4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP43Q70EL4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP43Q70EL4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.4■□□□□ 0.7
USP43Q70EL4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP43Q70EL4 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
USP43Q70EL4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.4■□□□□ 0.7
USP43Q70EL4 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP43Q70EL4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP43Q70EL4 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP43Q70EL4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.39■□□□□ 0.7
USP43Q70EL4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP43Q70EL4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP43Q70EL4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP43Q70EL4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP43Q70EL4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP43Q70EL4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.39■□□□□ 0.69
USP43Q70EL4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP43Q70EL4 AC137630.3-201ENST00000607245 391 ntBASIC19.39■□□□□ 0.69
USP43Q70EL4 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
USP43Q70EL4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP43Q70EL4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.39■□□□□ 0.69
USP43Q70EL4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
USP43Q70EL4 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USP43Q70EL4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP43Q70EL4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.38■□□□□ 0.69
USP43Q70EL4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP43Q70EL4 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP43Q70EL4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP43Q70EL4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.38■□□□□ 0.69
USP43Q70EL4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
USP43Q70EL4 KRT16P3-201ENST00000439127 1283 ntBASIC19.38■□□□□ 0.69
USP43Q70EL4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
USP43Q70EL4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP43Q70EL4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP43Q70EL4 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP43Q70EL4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.38■□□□□ 0.69
USP43Q70EL4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms