Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 BRI3-207ENST00000539286 699 ntTSL 2 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 UQCRFS1P1-201ENST00000435169 820 ntBASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 MYCNOS-205ENST00000641950 531 ntBASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM1Q2M3G4 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SHROOM1Q2M3G4 C9orf163-202ENST00000624034 2573 ntBASIC25.21■■□□□ 1.63
SHROOM1Q2M3G4 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SHROOM1Q2M3G4 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SHROOM1Q2M3G4 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SHROOM1Q2M3G4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC25.21■■□□□ 1.63
SHROOM1Q2M3G4 TFG-210ENST00000620299 1289 ntTSL 5 BASIC25.21■■□□□ 1.63
SHROOM1Q2M3G4 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SHROOM1Q2M3G4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
SHROOM1Q2M3G4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
SHROOM1Q2M3G4 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC25.2■■□□□ 1.63
SHROOM1Q2M3G4 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC25.2■■□□□ 1.63
SHROOM1Q2M3G4 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 GUSBP6-202ENST00000438529 1198 ntBASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
SHROOM1Q2M3G4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC25.19■■□□□ 1.62
SHROOM1Q2M3G4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SHROOM1Q2M3G4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
SHROOM1Q2M3G4 CNN2P6-201ENST00000439038 900 ntBASIC25.19■■□□□ 1.62
SHROOM1Q2M3G4 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC25.19■■□□□ 1.62
SHROOM1Q2M3G4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC25.19■■□□□ 1.62
SHROOM1Q2M3G4 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SHROOM1Q2M3G4 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SHROOM1Q2M3G4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 AP006587.3-201ENST00000525742 1516 ntBASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 AC010141.2-201ENST00000452426 721 ntBASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SHROOM1Q2M3G4 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 LTK-203ENST00000453182 2412 ntTSL 2 BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 GPX1P1-201ENST00000388829 606 ntBASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.17■■□□□ 1.62
SHROOM1Q2M3G4 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 AC138907.5-202ENST00000569484 235 ntBASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 MDK-213ENST00000617138 635 ntTSL 2 BASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
SHROOM1Q2M3G4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms