Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.22■□□□□ 0.67
H3F3AP84243 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.22■□□□□ 0.67
H3F3AP84243 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.22■□□□□ 0.67
H3F3AP84243 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
H3F3AP84243 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
H3F3AP84243 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
H3F3AP84243 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
H3F3AP84243 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
H3F3AP84243 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.21■□□□□ 0.67
H3F3AP84243 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
H3F3AP84243 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
H3F3AP84243 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
H3F3AP84243 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
H3F3AP84243 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
H3F3AP84243 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.21■□□□□ 0.67
H3F3AP84243 AC027612.3-201ENST00000413684 1047 ntBASIC19.21■□□□□ 0.67
H3F3AP84243 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
H3F3AP84243 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
H3F3AP84243 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.21■□□□□ 0.67
H3F3AP84243 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
H3F3AP84243 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.21■□□□□ 0.67
H3F3AP84243 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.21■□□□□ 0.67
H3F3AP84243 C11orf96-202ENST00000528572 1834 ntBASIC19.21■□□□□ 0.67
H3F3AP84243 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
H3F3AP84243 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
H3F3AP84243 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.2■□□□□ 0.66
H3F3AP84243 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.2■□□□□ 0.66
H3F3AP84243 AC079834.2-201ENST00000609776 1949 ntBASIC19.2■□□□□ 0.66
H3F3AP84243 AC009237.3-201ENST00000393279 1427 ntBASIC19.2■□□□□ 0.66
H3F3AP84243 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.2■□□□□ 0.66
H3F3AP84243 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.2■□□□□ 0.66
H3F3AP84243 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.2■□□□□ 0.66
H3F3AP84243 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
H3F3AP84243 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
H3F3AP84243 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
H3F3AP84243 TPRG1LP1-201ENST00000598702 760 ntBASIC19.19■□□□□ 0.66
H3F3AP84243 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
H3F3AP84243 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.19■□□□□ 0.66
H3F3AP84243 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
H3F3AP84243 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
H3F3AP84243 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
H3F3AP84243 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
H3F3AP84243 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
H3F3AP84243 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
H3F3AP84243 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.18■□□□□ 0.66
H3F3AP84243 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
H3F3AP84243 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
H3F3AP84243 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
H3F3AP84243 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
H3F3AP84243 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
H3F3AP84243 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.18■□□□□ 0.66
H3F3AP84243 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
H3F3AP84243 FAM99A-202ENST00000538190 1989 ntBASIC19.18■□□□□ 0.66
H3F3AP84243 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
H3F3AP84243 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
H3F3AP84243 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
H3F3AP84243 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
H3F3AP84243 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
H3F3AP84243 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
H3F3AP84243 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
H3F3AP84243 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
H3F3AP84243 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
H3F3AP84243 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
H3F3AP84243 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
H3F3AP84243 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
H3F3AP84243 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.17■□□□□ 0.66
H3F3AP84243 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.17■□□□□ 0.66
H3F3AP84243 MIR6084-201ENST00000622012 110 ntBASIC19.17■□□□□ 0.66
H3F3AP84243 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.17■□□□□ 0.66
H3F3AP84243 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
H3F3AP84243 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
H3F3AP84243 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
H3F3AP84243 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
H3F3AP84243 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
H3F3AP84243 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
H3F3AP84243 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
H3F3AP84243 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
H3F3AP84243 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.16■□□□□ 0.66
H3F3AP84243 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
H3F3AP84243 AC005224.4-201ENST00000583262 1652 ntBASIC19.16■□□□□ 0.66
H3F3AP84243 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
H3F3AP84243 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
H3F3AP84243 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
H3F3AP84243 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms