Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PRKDCP78527 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC15.83■□□□□ 0.12
PRKDCP78527 AC055733.4-201ENST00000638462 1354 ntBASIC15.83■□□□□ 0.12
PRKDCP78527 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC15.83■□□□□ 0.12
PRKDCP78527 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PRKDCP78527 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC15.83■□□□□ 0.12
PRKDCP78527 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.83■□□□□ 0.12
PRKDCP78527 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
PRKDCP78527 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PRKDCP78527 POU5F1P4-201ENST00000413175 1085 ntBASIC15.82■□□□□ 0.12
PRKDCP78527 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC15.82■□□□□ 0.12
PRKDCP78527 AC133561.5-201ENST00000635547 218 ntBASIC15.82■□□□□ 0.12
PRKDCP78527 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PRKDCP78527 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PRKDCP78527 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PRKDCP78527 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PRKDCP78527 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PRKDCP78527 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC15.82■□□□□ 0.12
PRKDCP78527 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC15.82■□□□□ 0.12
PRKDCP78527 AC010141.2-201ENST00000452426 721 ntBASIC15.82■□□□□ 0.12
PRKDCP78527 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC15.82■□□□□ 0.12
PRKDCP78527 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC15.82■□□□□ 0.12
PRKDCP78527 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKDCP78527 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKDCP78527 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKDCP78527 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKDCP78527 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKDCP78527 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKDCP78527 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
PRKDCP78527 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKDCP78527 LINC01529-204ENST00000636474 1715 ntBASIC15.81■□□□□ 0.12
PRKDCP78527 NAA20-201ENST00000310450 920 ntTSL 2 BASIC15.81■□□□□ 0.12
PRKDCP78527 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.81■□□□□ 0.12
PRKDCP78527 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKDCP78527 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC15.8■□□□□ 0.12
PRKDCP78527 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
PRKDCP78527 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PRKDCP78527 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PRKDCP78527 CD177P1-201ENST00000606252 935 ntBASIC15.8■□□□□ 0.12
PRKDCP78527 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PRKDCP78527 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC15.8■□□□□ 0.12
PRKDCP78527 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
PRKDCP78527 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC15.8■□□□□ 0.12
PRKDCP78527 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PRKDCP78527 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC15.8■□□□□ 0.12
PRKDCP78527 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC15.8■□□□□ 0.12
PRKDCP78527 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PRKDCP78527 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PRKDCP78527 BMP1-204ENST00000397814 836 ntTSL 4 BASIC15.79■□□□□ 0.12
PRKDCP78527 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
PRKDCP78527 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC15.79■□□□□ 0.12
PRKDCP78527 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
PRKDCP78527 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKDCP78527 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKDCP78527 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKDCP78527 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC15.79■□□□□ 0.12
PRKDCP78527 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC15.79■□□□□ 0.12
PRKDCP78527 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKDCP78527 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PRKDCP78527 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC15.79■□□□□ 0.12
PRKDCP78527 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC15.79■□□□□ 0.12
PRKDCP78527 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PRKDCP78527 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKDCP78527 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PRKDCP78527 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKDCP78527 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
PRKDCP78527 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC15.79■□□□□ 0.12
PRKDCP78527 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.79■□□□□ 0.12
PRKDCP78527 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PRKDCP78527 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PRKDCP78527 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PRKDCP78527 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.78■□□□□ 0.12
PRKDCP78527 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC15.78■□□□□ 0.12
PRKDCP78527 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.78■□□□□ 0.12
PRKDCP78527 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC15.78■□□□□ 0.12
PRKDCP78527 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PRKDCP78527 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC15.78■□□□□ 0.12
PRKDCP78527 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC15.78■□□□□ 0.12
PRKDCP78527 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC15.78■□□□□ 0.12
PRKDCP78527 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC15.78■□□□□ 0.12
PRKDCP78527 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC15.78■□□□□ 0.12
PRKDCP78527 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PRKDCP78527 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC15.78■□□□□ 0.12
PRKDCP78527 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PRKDCP78527 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC15.78■□□□□ 0.12
PRKDCP78527 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PRKDCP78527 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PRKDCP78527 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC15.78■□□□□ 0.12
PRKDCP78527 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC15.78■□□□□ 0.12
PRKDCP78527 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PRKDCP78527 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.77■□□□□ 0.12
PRKDCP78527 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.77■□□□□ 0.12
PRKDCP78527 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PRKDCP78527 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC15.77■□□□□ 0.12
PRKDCP78527 FAM197Y4-202ENST00000622692 608 ntBASIC15.77■□□□□ 0.12
PRKDCP78527 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PRKDCP78527 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PRKDCP78527 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
PRKDCP78527 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PRKDCP78527 SNX21-213ENST00000614929 587 ntTSL 5 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms