Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CDX1P47902 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 AC006455.2-201ENST00000429931 906 ntBASIC17.37■□□□□ 0.37
CDX1P47902 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX1P47902 MIR3181-201ENST00000578512 73 ntBASIC17.37■□□□□ 0.37
CDX1P47902 MIR4767-201ENST00000582827 78 ntBASIC17.37■□□□□ 0.37
CDX1P47902 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.37■□□□□ 0.37
CDX1P47902 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX1P47902 AC136469.2-201ENST00000623944 1028 ntBASIC17.37■□□□□ 0.37
CDX1P47902 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.37■□□□□ 0.37
CDX1P47902 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.37■□□□□ 0.37
CDX1P47902 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX1P47902 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX1P47902 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CDX1P47902 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
CDX1P47902 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CDX1P47902 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 ASB1-202ENST00000409297 878 ntTSL 5 BASIC17.36■□□□□ 0.37
CDX1P47902 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX1P47902 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX1P47902 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.36■□□□□ 0.37
CDX1P47902 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
CDX1P47902 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CDX1P47902 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX1P47902 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CDX1P47902 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX1P47902 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.35■□□□□ 0.37
CDX1P47902 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC17.35■□□□□ 0.37
CDX1P47902 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX1P47902 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX1P47902 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC17.35■□□□□ 0.37
CDX1P47902 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.35■□□□□ 0.37
CDX1P47902 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.35■□□□□ 0.37
CDX1P47902 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CDX1P47902 GTSE1-AS1-202ENST00000623117 1518 ntBASIC17.35■□□□□ 0.37
CDX1P47902 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CDX1P47902 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.35■□□□□ 0.37
CDX1P47902 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX1P47902 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDX1P47902 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CDX1P47902 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC17.34■□□□□ 0.37
CDX1P47902 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC17.34■□□□□ 0.37
CDX1P47902 DUX4L4-201ENST00000566884 1269 ntBASIC17.34■□□□□ 0.37
CDX1P47902 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC17.34■□□□□ 0.37
CDX1P47902 AC144652.1-201ENST00000609974 1624 ntBASIC17.34■□□□□ 0.37
CDX1P47902 pRNA.6-201ENST00000610482 90 ntBASIC17.34■□□□□ 0.37
CDX1P47902 pRNA.5-201ENST00000612139 90 ntBASIC17.34■□□□□ 0.37
CDX1P47902 pRNA.11-201ENST00000618423 90 ntBASIC17.34■□□□□ 0.37
CDX1P47902 pRNA.13-201ENST00000619112 90 ntBASIC17.34■□□□□ 0.37
CDX1P47902 AL136967.2-201ENST00000623968 743 ntBASIC17.34■□□□□ 0.37
CDX1P47902 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CDX1P47902 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDX1P47902 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDX1P47902 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.33■□□□□ 0.37
CDX1P47902 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.33■□□□□ 0.37
CDX1P47902 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDX1P47902 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
CDX1P47902 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.33■□□□□ 0.37
CDX1P47902 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDX1P47902 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDX1P47902 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.33■□□□□ 0.36
CDX1P47902 MIR939-201ENST00000401314 82 ntBASIC17.33■□□□□ 0.36
CDX1P47902 AC091305.1-201ENST00000479476 895 ntBASIC17.33■□□□□ 0.36
CDX1P47902 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDX1P47902 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDX1P47902 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CDX1P47902 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.33■□□□□ 0.36
CDX1P47902 LINC01529-204ENST00000636474 1715 ntBASIC17.33■□□□□ 0.36
CDX1P47902 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX1P47902 FBXW4P1-201ENST00000426721 2239 ntBASIC17.32■□□□□ 0.36
CDX1P47902 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
CDX1P47902 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX1P47902 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.32■□□□□ 0.36
CDX1P47902 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CDX1P47902 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX1P47902 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CDX1P47902 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX1P47902 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX1P47902 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC17.32■□□□□ 0.36
CDX1P47902 AP001330.3-201ENST00000520123 633 ntBASIC17.32■□□□□ 0.36
CDX1P47902 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CDX1P47902 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms