Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC14.1□□□□□ -0.15
RPL28P46779 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC14.1□□□□□ -0.15
RPL28P46779 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
RPL28P46779 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC14.1□□□□□ -0.15
RPL28P46779 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RPL28P46779 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RPL28P46779 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC14.09□□□□□ -0.15
RPL28P46779 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPL28P46779 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC14.09□□□□□ -0.15
RPL28P46779 AF106564.1-201ENST00000607058 2553 ntBASIC14.09□□□□□ -0.15
RPL28P46779 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
RPL28P46779 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
RPL28P46779 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RPL28P46779 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC14.09□□□□□ -0.15
RPL28P46779 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC14.09□□□□□ -0.15
RPL28P46779 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPL28P46779 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RPL28P46779 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPL28P46779 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RPL28P46779 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RPL28P46779 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC14.09□□□□□ -0.15
RPL28P46779 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPL28P46779 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPL28P46779 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RPL28P46779 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC14.08□□□□□ -0.15
RPL28P46779 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RPL28P46779 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RPL28P46779 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
RPL28P46779 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPL28P46779 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPL28P46779 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
RPL28P46779 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPL28P46779 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPL28P46779 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPL28P46779 BX664725.1-201ENST00000438252 379 ntBASIC14.08□□□□□ -0.16
RPL28P46779 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC14.08□□□□□ -0.16
RPL28P46779 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC14.08□□□□□ -0.16
RPL28P46779 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC14.08□□□□□ -0.16
RPL28P46779 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC14.08□□□□□ -0.16
RPL28P46779 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC14.08□□□□□ -0.16
RPL28P46779 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC14.08□□□□□ -0.16
RPL28P46779 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RPL28P46779 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
RPL28P46779 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPL28P46779 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC14.08□□□□□ -0.16
RPL28P46779 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC14.08□□□□□ -0.16
RPL28P46779 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC14.08□□□□□ -0.16
RPL28P46779 AC144652.1-201ENST00000609974 1624 ntBASIC14.08□□□□□ -0.16
RPL28P46779 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC14.07□□□□□ -0.16
RPL28P46779 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
RPL28P46779 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPL28P46779 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPL28P46779 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPL28P46779 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC14.07□□□□□ -0.16
RPL28P46779 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
RPL28P46779 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPL28P46779 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
RPL28P46779 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPL28P46779 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC14.07□□□□□ -0.16
RPL28P46779 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPL28P46779 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
RPL28P46779 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPL28P46779 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC14.06□□□□□ -0.16
RPL28P46779 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
RPL28P46779 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
RPL28P46779 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC14.06□□□□□ -0.16
RPL28P46779 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
RPL28P46779 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
RPL28P46779 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
RPL28P46779 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC14.06□□□□□ -0.16
RPL28P46779 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC14.06□□□□□ -0.16
RPL28P46779 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
RPL28P46779 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC14.06□□□□□ -0.16
RPL28P46779 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPL28P46779 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC14.05□□□□□ -0.16
RPL28P46779 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RPL28P46779 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
RPL28P46779 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms