Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.45■□□□□ 0.86
MSX2P35548 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSX2P35548 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
MSX2P35548 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
MSX2P35548 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
MSX2P35548 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
MSX2P35548 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.45■□□□□ 0.86
MSX2P35548 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
MSX2P35548 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
MSX2P35548 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSX2P35548 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSX2P35548 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSX2P35548 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSX2P35548 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSX2P35548 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.44■□□□□ 0.86
MSX2P35548 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.44■□□□□ 0.86
MSX2P35548 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.44■□□□□ 0.86
MSX2P35548 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.44■□□□□ 0.86
MSX2P35548 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.44■□□□□ 0.86
MSX2P35548 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSX2P35548 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSX2P35548 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSX2P35548 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.44■□□□□ 0.86
MSX2P35548 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
MSX2P35548 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSX2P35548 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
MSX2P35548 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.43■□□□□ 0.86
MSX2P35548 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 AC005703.6-201ENST00000623265 1329 ntBASIC20.43■□□□□ 0.86
MSX2P35548 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
MSX2P35548 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.43■□□□□ 0.86
MSX2P35548 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
MSX2P35548 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSX2P35548 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSX2P35548 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
MSX2P35548 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
MSX2P35548 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSX2P35548 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.42■□□□□ 0.86
MSX2P35548 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSX2P35548 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSX2P35548 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSX2P35548 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
MSX2P35548 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSX2P35548 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSX2P35548 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSX2P35548 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.41■□□□□ 0.86
MSX2P35548 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSX2P35548 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.41■□□□□ 0.86
MSX2P35548 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSX2P35548 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.41■□□□□ 0.86
MSX2P35548 PCDHAC2-203ENST00000615316 3011 ntBASIC20.41■□□□□ 0.86
MSX2P35548 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.41■□□□□ 0.86
MSX2P35548 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSX2P35548 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSX2P35548 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.41■□□□□ 0.86
MSX2P35548 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSX2P35548 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
MSX2P35548 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSX2P35548 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
MSX2P35548 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSX2P35548 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSX2P35548 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSX2P35548 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.4■□□□□ 0.86
MSX2P35548 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.4■□□□□ 0.86
MSX2P35548 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.4■□□□□ 0.86
MSX2P35548 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.4■□□□□ 0.86
MSX2P35548 AC004987.1-201ENST00000428627 508 ntBASIC20.4■□□□□ 0.86
MSX2P35548 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.4■□□□□ 0.86
MSX2P35548 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.4■□□□□ 0.86
MSX2P35548 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSX2P35548 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MSX2P35548 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.4■□□□□ 0.86
MSX2P35548 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
MSX2P35548 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
MSX2P35548 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
MSX2P35548 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSX2P35548 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
MSX2P35548 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSX2P35548 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSX2P35548 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSX2P35548 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
MSX2P35548 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSX2P35548 FEM1AP1-201ENST00000431297 1995 ntBASIC20.39■□□□□ 0.85
MSX2P35548 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.39■□□□□ 0.85
MSX2P35548 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSX2P35548 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSX2P35548 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.39■□□□□ 0.85
MSX2P35548 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MSX2P35548 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSX2P35548 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
MSX2P35548 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms