Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
RORAP35398 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
RORAP35398 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RORAP35398 AC012676.1-201ENST00000574705 1949 ntBASIC20.39■□□□□ 0.86
RORAP35398 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.39■□□□□ 0.86
RORAP35398 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.39■□□□□ 0.86
RORAP35398 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.39■□□□□ 0.85
RORAP35398 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.39■□□□□ 0.85
RORAP35398 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
RORAP35398 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.39■□□□□ 0.85
RORAP35398 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.39■□□□□ 0.85
RORAP35398 AC080038.1-201ENST00000611274 1154 ntBASIC20.39■□□□□ 0.85
RORAP35398 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.39■□□□□ 0.85
RORAP35398 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
RORAP35398 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RORAP35398 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RORAP35398 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RORAP35398 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.38■□□□□ 0.85
RORAP35398 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.38■□□□□ 0.85
RORAP35398 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RORAP35398 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.38■□□□□ 0.85
RORAP35398 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
RORAP35398 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RORAP35398 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RORAP35398 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
RORAP35398 KRT87P-202ENST00000534226 1464 ntBASIC20.37■□□□□ 0.85
RORAP35398 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RORAP35398 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RORAP35398 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
RORAP35398 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RORAP35398 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.37■□□□□ 0.85
RORAP35398 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RORAP35398 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RORAP35398 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RORAP35398 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.37■□□□□ 0.85
RORAP35398 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.37■□□□□ 0.85
RORAP35398 RAP2CP1-201ENST00000605103 478 ntBASIC20.37■□□□□ 0.85
RORAP35398 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RORAP35398 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RORAP35398 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
RORAP35398 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RORAP35398 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RORAP35398 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
RORAP35398 AC087742.1-201ENST00000575880 1738 ntBASIC20.36■□□□□ 0.85
RORAP35398 AC055733.4-201ENST00000638462 1354 ntBASIC20.36■□□□□ 0.85
RORAP35398 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RORAP35398 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RORAP35398 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.36■□□□□ 0.85
RORAP35398 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.36■□□□□ 0.85
RORAP35398 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RORAP35398 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RORAP35398 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
RORAP35398 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
RORAP35398 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RORAP35398 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.35■□□□□ 0.85
RORAP35398 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RORAP35398 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RORAP35398 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RORAP35398 CDCA4P2-201ENST00000441182 718 ntBASIC20.35■□□□□ 0.85
RORAP35398 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.35■□□□□ 0.85
RORAP35398 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.35■□□□□ 0.85
RORAP35398 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.35■□□□□ 0.85
RORAP35398 ESRRAP2-201ENST00000418437 1549 ntBASIC20.35■□□□□ 0.85
RORAP35398 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RORAP35398 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RORAP35398 LINC00526-201ENST00000581067 1875 ntBASIC20.35■□□□□ 0.85
RORAP35398 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.34■□□□□ 0.85
RORAP35398 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RORAP35398 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.34■□□□□ 0.85
RORAP35398 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RORAP35398 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RORAP35398 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RORAP35398 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RORAP35398 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RORAP35398 BID-214ENST00000617586 542 ntTSL 5 BASIC20.34■□□□□ 0.85
RORAP35398 AC073111.5-205ENST00000641717 521 ntBASIC20.34■□□□□ 0.85
RORAP35398 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RORAP35398 OR7E47P-201ENST00000546390 1422 ntBASIC20.34■□□□□ 0.85
RORAP35398 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RORAP35398 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RORAP35398 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.34■□□□□ 0.85
RORAP35398 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RORAP35398 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RORAP35398 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RORAP35398 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RORAP35398 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RORAP35398 KRT18P11-201ENST00000435214 1283 ntBASIC20.33■□□□□ 0.85
RORAP35398 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.33■□□□□ 0.85
RORAP35398 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.33■□□□□ 0.85
RORAP35398 AC104187.1-201ENST00000607510 612 ntBASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms