Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.66■□□□□ 0.74
MSX1P28360 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.66■□□□□ 0.74
MSX1P28360 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
MSX1P28360 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.66■□□□□ 0.74
MSX1P28360 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.66■□□□□ 0.74
MSX1P28360 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.66■□□□□ 0.74
MSX1P28360 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.66■□□□□ 0.74
MSX1P28360 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.66■□□□□ 0.74
MSX1P28360 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.66■□□□□ 0.74
MSX1P28360 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.66■□□□□ 0.74
MSX1P28360 MIR6084-201ENST00000622012 110 ntBASIC19.66■□□□□ 0.74
MSX1P28360 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
MSX1P28360 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.66■□□□□ 0.74
MSX1P28360 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX1P28360 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
MSX1P28360 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSX1P28360 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.65■□□□□ 0.74
MSX1P28360 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX1P28360 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.65■□□□□ 0.74
MSX1P28360 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.65■□□□□ 0.74
MSX1P28360 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSX1P28360 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.65■□□□□ 0.74
MSX1P28360 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.65■□□□□ 0.74
MSX1P28360 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MSX1P28360 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
MSX1P28360 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.64■□□□□ 0.74
MSX1P28360 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX1P28360 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.64■□□□□ 0.73
MSX1P28360 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX1P28360 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.64■□□□□ 0.73
MSX1P28360 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
MSX1P28360 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX1P28360 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MSX1P28360 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSX1P28360 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX1P28360 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.63■□□□□ 0.73
MSX1P28360 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX1P28360 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
MSX1P28360 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX1P28360 AC092053.2-201ENST00000640557 1818 ntBASIC19.63■□□□□ 0.73
MSX1P28360 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
MSX1P28360 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.63■□□□□ 0.73
MSX1P28360 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSX1P28360 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.63■□□□□ 0.73
MSX1P28360 AC004911.1-201ENST00000416316 871 ntBASIC19.63■□□□□ 0.73
MSX1P28360 CCDC92B-201ENST00000575506 885 ntBASIC19.63■□□□□ 0.73
MSX1P28360 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSX1P28360 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSX1P28360 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
MSX1P28360 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.62■□□□□ 0.73
MSX1P28360 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
MSX1P28360 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.62■□□□□ 0.73
MSX1P28360 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
MSX1P28360 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.62■□□□□ 0.73
MSX1P28360 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
MSX1P28360 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSX1P28360 AP004607.7-201ENST00000527152 1677 ntBASIC19.62■□□□□ 0.73
MSX1P28360 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX1P28360 BX005040.4-201ENST00000637145 1518 ntBASIC19.61■□□□□ 0.73
MSX1P28360 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.61■□□□□ 0.73
MSX1P28360 AC009237.3-201ENST00000393279 1427 ntBASIC19.61■□□□□ 0.73
MSX1P28360 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX1P28360 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.61■□□□□ 0.73
MSX1P28360 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX1P28360 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.61■□□□□ 0.73
MSX1P28360 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.61■□□□□ 0.73
MSX1P28360 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.61■□□□□ 0.73
MSX1P28360 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MSX1P28360 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX1P28360 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSX1P28360 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX1P28360 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSX1P28360 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.6■□□□□ 0.73
MSX1P28360 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MSX1P28360 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.6■□□□□ 0.73
MSX1P28360 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MSX1P28360 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
MSX1P28360 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.6■□□□□ 0.73
MSX1P28360 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.6■□□□□ 0.73
MSX1P28360 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms