Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM13O60858 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM13O60858 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.11■□□□□ 0.97
TRIM13O60858 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM13O60858 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
TRIM13O60858 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TRIM13O60858 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM13O60858 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TRIM13O60858 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TRIM13O60858 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM13O60858 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM13O60858 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM13O60858 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM13O60858 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM13O60858 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
TRIM13O60858 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM13O60858 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM13O60858 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TRIM13O60858 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM13O60858 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM13O60858 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM13O60858 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM13O60858 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM13O60858 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM13O60858 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM13O60858 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
TRIM13O60858 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM13O60858 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
TRIM13O60858 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM13O60858 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM13O60858 pRNA.6-201ENST00000610482 90 ntBASIC21.09■□□□□ 0.97
TRIM13O60858 pRNA.5-201ENST00000612139 90 ntBASIC21.09■□□□□ 0.97
TRIM13O60858 pRNA.11-201ENST00000618423 90 ntBASIC21.09■□□□□ 0.97
TRIM13O60858 pRNA.13-201ENST00000619112 90 ntBASIC21.09■□□□□ 0.97
TRIM13O60858 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM13O60858 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM13O60858 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM13O60858 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM13O60858 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM13O60858 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
TRIM13O60858 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
TRIM13O60858 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM13O60858 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM13O60858 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
TRIM13O60858 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM13O60858 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM13O60858 AC068587.7-201ENST00000641602 218 ntBASIC21.08■□□□□ 0.97
TRIM13O60858 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.08■□□□□ 0.96
TRIM13O60858 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM13O60858 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM13O60858 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM13O60858 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM13O60858 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM13O60858 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.08■□□□□ 0.96
TRIM13O60858 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM13O60858 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM13O60858 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM13O60858 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM13O60858 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
TRIM13O60858 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TRIM13O60858 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM13O60858 AC006455.2-201ENST00000429931 906 ntBASIC21.07■□□□□ 0.96
TRIM13O60858 AC009299.2-201ENST00000482477 511 ntBASIC21.07■□□□□ 0.96
TRIM13O60858 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM13O60858 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM13O60858 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
TRIM13O60858 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM13O60858 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM13O60858 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM13O60858 SLC25A24-204ENST00000569674 2357 ntBASIC21.07■□□□□ 0.96
TRIM13O60858 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM13O60858 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM13O60858 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM13O60858 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM13O60858 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM13O60858 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM13O60858 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
TRIM13O60858 RARRES2P1-201ENST00000474487 481 ntBASIC21.06■□□□□ 0.96
TRIM13O60858 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM13O60858 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM13O60858 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM13O60858 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM13O60858 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.06■□□□□ 0.96
TRIM13O60858 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM13O60858 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM13O60858 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM13O60858 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM13O60858 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM13O60858 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM13O60858 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM13O60858 UNC93B8-201ENST00000511903 705 ntBASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms