Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20■□□□□ 0.79
PRKNO60260 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PRKNO60260 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PRKNO60260 AC012676.1-201ENST00000574705 1949 ntBASIC20■□□□□ 0.79
PRKNO60260 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20■□□□□ 0.79
PRKNO60260 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20■□□□□ 0.79
PRKNO60260 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
PRKNO60260 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20■□□□□ 0.79
PRKNO60260 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20■□□□□ 0.79
PRKNO60260 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20■□□□□ 0.79
PRKNO60260 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20■□□□□ 0.79
PRKNO60260 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20■□□□□ 0.79
PRKNO60260 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20■□□□□ 0.79
PRKNO60260 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PRKNO60260 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
PRKNO60260 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PRKNO60260 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20■□□□□ 0.79
PRKNO60260 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
PRKNO60260 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PRKNO60260 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.99■□□□□ 0.79
PRKNO60260 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.99■□□□□ 0.79
PRKNO60260 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PRKNO60260 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.99■□□□□ 0.79
PRKNO60260 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.99■□□□□ 0.79
PRKNO60260 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
PRKNO60260 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.99■□□□□ 0.79
PRKNO60260 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PRKNO60260 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.98■□□□□ 0.79
PRKNO60260 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
PRKNO60260 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PRKNO60260 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.98■□□□□ 0.79
PRKNO60260 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PRKNO60260 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.98■□□□□ 0.79
PRKNO60260 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
PRKNO60260 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PRKNO60260 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PRKNO60260 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PRKNO60260 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PRKNO60260 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.97■□□□□ 0.79
PRKNO60260 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PRKNO60260 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PRKNO60260 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PRKNO60260 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
PRKNO60260 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.97■□□□□ 0.79
PRKNO60260 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PRKNO60260 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PRKNO60260 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.97■□□□□ 0.79
PRKNO60260 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PRKNO60260 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
PRKNO60260 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PRKNO60260 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PRKNO60260 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
PRKNO60260 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.97■□□□□ 0.79
PRKNO60260 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.97■□□□□ 0.79
PRKNO60260 AP004607.7-201ENST00000527152 1677 ntBASIC19.97■□□□□ 0.79
PRKNO60260 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.97■□□□□ 0.79
PRKNO60260 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PRKNO60260 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
PRKNO60260 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 AL117328.2-201ENST00000624617 1940 ntBASIC19.96■□□□□ 0.79
PRKNO60260 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.96■□□□□ 0.79
PRKNO60260 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
PRKNO60260 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
PRKNO60260 KRT18P5-201ENST00000436075 1291 ntBASIC19.96■□□□□ 0.79
PRKNO60260 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.96■□□□□ 0.79
PRKNO60260 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
PRKNO60260 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.96■□□□□ 0.79
PRKNO60260 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
PRKNO60260 AC026471.6-201ENST00000622954 1905 ntBASIC19.96■□□□□ 0.79
PRKNO60260 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PRKNO60260 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PRKNO60260 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.95■□□□□ 0.78
PRKNO60260 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.95■□□□□ 0.78
PRKNO60260 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PRKNO60260 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PRKNO60260 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PRKNO60260 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.95■□□□□ 0.78
PRKNO60260 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PRKNO60260 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PRKNO60260 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PRKNO60260 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.95■□□□□ 0.78
PRKNO60260 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PRKNO60260 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms