Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CACNA1AO00555 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CACNA1AO00555 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CACNA1AO00555 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CACNA1AO00555 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CACNA1AO00555 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CACNA1AO00555 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.64■□□□□ 0.89
CACNA1AO00555 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CACNA1AO00555 AC138907.5-202ENST00000569484 235 ntBASIC20.64■□□□□ 0.89
CACNA1AO00555 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.63■□□□□ 0.89
CACNA1AO00555 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CACNA1AO00555 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1AO00555 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.63■□□□□ 0.89
CACNA1AO00555 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.63■□□□□ 0.89
CACNA1AO00555 AP001412.1-201ENST00000608405 714 ntBASIC20.63■□□□□ 0.89
CACNA1AO00555 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1AO00555 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.63■□□□□ 0.89
CACNA1AO00555 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.63■□□□□ 0.89
CACNA1AO00555 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1AO00555 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1AO00555 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.63■□□□□ 0.89
CACNA1AO00555 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.63■□□□□ 0.89
CACNA1AO00555 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CACNA1AO00555 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.63■□□□□ 0.89
CACNA1AO00555 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
CACNA1AO00555 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.62■□□□□ 0.89
CACNA1AO00555 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1AO00555 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.62■□□□□ 0.89
CACNA1AO00555 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1AO00555 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1AO00555 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.62■□□□□ 0.89
CACNA1AO00555 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.62■□□□□ 0.89
CACNA1AO00555 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.62■□□□□ 0.89
CACNA1AO00555 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.62■□□□□ 0.89
CACNA1AO00555 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CACNA1AO00555 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 AC144652.1-201ENST00000609974 1624 ntBASIC20.61■□□□□ 0.89
CACNA1AO00555 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.61■□□□□ 0.89
CACNA1AO00555 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.61■□□□□ 0.89
CACNA1AO00555 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.61■□□□□ 0.89
CACNA1AO00555 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1AO00555 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1AO00555 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
CACNA1AO00555 AP000593.1-201ENST00000393668 712 ntBASIC20.6■□□□□ 0.89
CACNA1AO00555 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CACNA1AO00555 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1AO00555 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CACNA1AO00555 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1AO00555 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1AO00555 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.6■□□□□ 0.89
CACNA1AO00555 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CACNA1AO00555 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1AO00555 AC060766.5-201ENST00000590539 871 ntBASIC20.6■□□□□ 0.89
CACNA1AO00555 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CACNA1AO00555 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.59■□□□□ 0.89
CACNA1AO00555 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1AO00555 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1AO00555 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1AO00555 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1AO00555 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1AO00555 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CACNA1AO00555 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.59■□□□□ 0.89
CACNA1AO00555 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.59■□□□□ 0.89
CACNA1AO00555 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.59■□□□□ 0.89
CACNA1AO00555 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1AO00555 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1AO00555 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.58■□□□□ 0.89
CACNA1AO00555 AC010501.1-201ENST00000606270 1962 ntBASIC20.58■□□□□ 0.89
CACNA1AO00555 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1AO00555 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CACNA1AO00555 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.58■□□□□ 0.88
CACNA1AO00555 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.58■□□□□ 0.88
CACNA1AO00555 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1AO00555 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CACNA1AO00555 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.58■□□□□ 0.88
CACNA1AO00555 KRT126P-201ENST00000549467 1181 ntBASIC20.58■□□□□ 0.88
CACNA1AO00555 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
CACNA1AO00555 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CACNA1AO00555 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.57■□□□□ 0.88
CACNA1AO00555 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CACNA1AO00555 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1AO00555 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1AO00555 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.57■□□□□ 0.88
CACNA1AO00555 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1AO00555 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1AO00555 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1AO00555 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1AO00555 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CACNA1AO00555 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CACNA1AO00555 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.56■□□□□ 0.88
CACNA1AO00555 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.56■□□□□ 0.88
CACNA1AO00555 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms