Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGN4O00479 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGN4O00479 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
HMGN4O00479 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGN4O00479 Z98882.1-201ENST00000622160 2253 ntBASIC20■□□□□ 0.79
HMGN4O00479 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGN4O00479 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
HMGN4O00479 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20■□□□□ 0.79
HMGN4O00479 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20■□□□□ 0.79
HMGN4O00479 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGN4O00479 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGN4O00479 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGN4O00479 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20■□□□□ 0.79
HMGN4O00479 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
HMGN4O00479 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20■□□□□ 0.79
HMGN4O00479 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
HMGN4O00479 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGN4O00479 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGN4O00479 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGN4O00479 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
HMGN4O00479 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGN4O00479 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.99■□□□□ 0.79
HMGN4O00479 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGN4O00479 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGN4O00479 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
HMGN4O00479 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGN4O00479 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGN4O00479 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGN4O00479 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGN4O00479 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
HMGN4O00479 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGN4O00479 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGN4O00479 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HMGN4O00479 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
HMGN4O00479 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGN4O00479 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HMGN4O00479 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGN4O00479 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGN4O00479 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HMGN4O00479 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.98■□□□□ 0.79
HMGN4O00479 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HMGN4O00479 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.98■□□□□ 0.79
HMGN4O00479 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HMGN4O00479 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGN4O00479 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGN4O00479 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HMGN4O00479 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.97■□□□□ 0.79
HMGN4O00479 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGN4O00479 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.97■□□□□ 0.79
HMGN4O00479 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGN4O00479 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGN4O00479 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGN4O00479 AC005229.4-201ENST00000610085 2198 ntBASIC19.97■□□□□ 0.79
HMGN4O00479 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGN4O00479 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGN4O00479 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGN4O00479 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.96■□□□□ 0.79
HMGN4O00479 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGN4O00479 UNC93B3-201ENST00000308076 687 ntBASIC19.96■□□□□ 0.79
HMGN4O00479 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGN4O00479 MIR4767-201ENST00000582827 78 ntBASIC19.96■□□□□ 0.79
HMGN4O00479 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.96■□□□□ 0.79
HMGN4O00479 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGN4O00479 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGN4O00479 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGN4O00479 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.96■□□□□ 0.79
HMGN4O00479 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HMGN4O00479 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.95■□□□□ 0.78
HMGN4O00479 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.95■□□□□ 0.78
HMGN4O00479 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 AC104564.3-201ENST00000582367 638 ntBASIC19.95■□□□□ 0.78
HMGN4O00479 AC131212.1-201ENST00000613771 668 ntBASIC19.95■□□□□ 0.78
HMGN4O00479 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGN4O00479 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HMGN4O00479 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGN4O00479 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGN4O00479 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGN4O00479 AP004607.7-201ENST00000527152 1677 ntBASIC19.94■□□□□ 0.78
HMGN4O00479 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGN4O00479 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGN4O00479 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGN4O00479 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
HMGN4O00479 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGN4O00479 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGN4O00479 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGN4O00479 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGN4O00479 AL034346.1-201ENST00000568244 1277 ntBASIC19.94■□□□□ 0.78
HMGN4O00479 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGN4O00479 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGN4O00479 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGN4O00479 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGN4O00479 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms