Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.22■■□□□ 1.31
SIX2Q9NPC8 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.22■■□□□ 1.31
SIX2Q9NPC8 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SIX2Q9NPC8 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SIX2Q9NPC8 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SIX2Q9NPC8 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
SIX2Q9NPC8 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SIX2Q9NPC8 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.22■■□□□ 1.31
SIX2Q9NPC8 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 BX842568.3-201ENST00000418104 571 ntBASIC23.21■■□□□ 1.31
SIX2Q9NPC8 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 AC133561.4-201ENST00000566112 224 ntBASIC23.21■■□□□ 1.31
SIX2Q9NPC8 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 AL137060.1-201ENST00000618151 2648 ntBASIC23.21■■□□□ 1.31
SIX2Q9NPC8 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SIX2Q9NPC8 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SIX2Q9NPC8 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
SIX2Q9NPC8 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
SIX2Q9NPC8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SIX2Q9NPC8 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 EFS-203ENST00000429593 2610 ntTSL 2 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 AC135279.3-201ENST00000610945 1311 ntBASIC23.18■■□□□ 1.3
SIX2Q9NPC8 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.18■■□□□ 1.3
SIX2Q9NPC8 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 AC008406.3-201ENST00000620001 1374 ntBASIC23.17■■□□□ 1.3
SIX2Q9NPC8 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SIX2Q9NPC8 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.16■■□□□ 1.3
SIX2Q9NPC8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
SIX2Q9NPC8 AC096631.2-201ENST00000436136 790 ntBASIC23.16■■□□□ 1.3
SIX2Q9NPC8 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.16■■□□□ 1.3
SIX2Q9NPC8 AC233992.3-201ENST00000607491 485 ntBASIC23.16■■□□□ 1.3
SIX2Q9NPC8 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
SIX2Q9NPC8 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SIX2Q9NPC8 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.16■■□□□ 1.3
SIX2Q9NPC8 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SIX2Q9NPC8 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.14■■□□□ 1.3
SIX2Q9NPC8 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.14■■□□□ 1.3
SIX2Q9NPC8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.14■■□□□ 1.3
SIX2Q9NPC8 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
SIX2Q9NPC8 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SIX2Q9NPC8 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
SIX2Q9NPC8 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.14■■□□□ 1.29
SIX2Q9NPC8 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SIX2Q9NPC8 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.14■■□□□ 1.29
SIX2Q9NPC8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms