Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC27.57■■■□□ 2
USP42Q9H9J4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC27.57■■■□□ 2
USP42Q9H9J4 BRI3-207ENST00000539286 699 ntTSL 2 BASIC27.57■■■□□ 2
USP42Q9H9J4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC27.57■■■□□ 2
USP42Q9H9J4 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC27.57■■■□□ 2
USP42Q9H9J4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC27.57■■■□□ 2
USP42Q9H9J4 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
USP42Q9H9J4 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC27.56■■■□□ 2
USP42Q9H9J4 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
USP42Q9H9J4 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
USP42Q9H9J4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC27.56■■■□□ 2
USP42Q9H9J4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
USP42Q9H9J4 DUSP8P5-201ENST00000422884 1815 ntBASIC27.56■■■□□ 2
USP42Q9H9J4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC27.55■■■□□ 2
USP42Q9H9J4 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC27.55■■■□□ 2
USP42Q9H9J4 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC27.55■■■□□ 2
USP42Q9H9J4 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC27.55■■■□□ 2
USP42Q9H9J4 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC27.55■■■□□ 2
USP42Q9H9J4 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
USP42Q9H9J4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC27.55■■■□□ 2
USP42Q9H9J4 SLC29A4P1-201ENST00000398760 971 ntBASIC27.55■■■□□ 2
USP42Q9H9J4 CNN2P6-201ENST00000439038 900 ntBASIC27.55■■■□□ 2
USP42Q9H9J4 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC27.55■■■□□ 2
USP42Q9H9J4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC27.55■■■□□ 2
USP42Q9H9J4 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC27.55■■■□□ 2
USP42Q9H9J4 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
USP42Q9H9J4 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC27.55■■■□□ 2
USP42Q9H9J4 DUSP8P3-201ENST00000399571 1760 ntBASIC27.54■■■□□ 2
USP42Q9H9J4 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
USP42Q9H9J4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC27.54■■■□□ 2
USP42Q9H9J4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC27.54■■■□□ 2
USP42Q9H9J4 NFE2L3P1-201ENST00000588207 1959 ntBASIC27.54■■■□□ 2
USP42Q9H9J4 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC27.54■■■□□ 2
USP42Q9H9J4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
USP42Q9H9J4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC27.53■■■□□ 2
USP42Q9H9J4 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC27.53■■■□□ 2
USP42Q9H9J4 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
USP42Q9H9J4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
USP42Q9H9J4 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
USP42Q9H9J4 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
USP42Q9H9J4 PXK-203ENST00000383715 1756 ntTSL 5 BASIC27.53■■■□□ 2
USP42Q9H9J4 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC27.53■■■□□ 2
USP42Q9H9J4 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC27.53■■■□□ 2
USP42Q9H9J4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC27.53■■■□□ 2
USP42Q9H9J4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC27.53■■■□□ 2
USP42Q9H9J4 AP001160.3-201ENST00000601484 763 ntBASIC27.53■■■□□ 2
USP42Q9H9J4 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
USP42Q9H9J4 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
USP42Q9H9J4 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
USP42Q9H9J4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
USP42Q9H9J4 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC27.52■■■□□ 2
USP42Q9H9J4 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
USP42Q9H9J4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC27.52■■■□□ 2
USP42Q9H9J4 AC098934.4-201ENST00000564127 592 ntBASIC27.52■■■□□ 2
USP42Q9H9J4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC27.52■■■□□ 2
USP42Q9H9J4 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC27.52■■■□□ 2
USP42Q9H9J4 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC27.52■■■□□ 2
USP42Q9H9J4 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC27.52■■■□□ 2
USP42Q9H9J4 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC27.51■■■□□ 2
USP42Q9H9J4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
USP42Q9H9J4 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC27.51■■□□□ 1.99
USP42Q9H9J4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
USP42Q9H9J4 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC27.51■■□□□ 1.99
USP42Q9H9J4 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
USP42Q9H9J4 MFF-207ENST00000409565 1548 ntTSL 2 BASIC27.51■■□□□ 1.99
USP42Q9H9J4 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
USP42Q9H9J4 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
USP42Q9H9J4 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC27.5■■□□□ 1.99
USP42Q9H9J4 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC27.5■■□□□ 1.99
USP42Q9H9J4 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
USP42Q9H9J4 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC27.5■■□□□ 1.99
USP42Q9H9J4 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC27.5■■□□□ 1.99
USP42Q9H9J4 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC27.5■■□□□ 1.99
USP42Q9H9J4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC27.5■■□□□ 1.99
USP42Q9H9J4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
USP42Q9H9J4 AC073210.2-201ENST00000430369 194 ntBASIC27.5■■□□□ 1.99
USP42Q9H9J4 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
USP42Q9H9J4 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
USP42Q9H9J4 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
USP42Q9H9J4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
USP42Q9H9J4 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
USP42Q9H9J4 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
USP42Q9H9J4 CASK-201ENST00000378154 2494 ntTSL 5 BASIC27.49■■□□□ 1.99
USP42Q9H9J4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
USP42Q9H9J4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC27.49■■□□□ 1.99
USP42Q9H9J4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC27.49■■□□□ 1.99
USP42Q9H9J4 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
USP42Q9H9J4 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC27.49■■□□□ 1.99
USP42Q9H9J4 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC27.49■■□□□ 1.99
USP42Q9H9J4 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC27.48■■□□□ 1.99
USP42Q9H9J4 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC27.48■■□□□ 1.99
USP42Q9H9J4 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC27.48■■□□□ 1.99
USP42Q9H9J4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC27.48■■□□□ 1.99
USP42Q9H9J4 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
USP42Q9H9J4 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
USP42Q9H9J4 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
USP42Q9H9J4 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
USP42Q9H9J4 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC27.47■■□□□ 1.99
USP42Q9H9J4 APTR-203ENST00000430801 583 ntTSL 5 BASIC27.47■■□□□ 1.99
USP42Q9H9J4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC27.47■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms