Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VMP1Q96GC9 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
VMP1Q96GC9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VMP1Q96GC9 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VMP1Q96GC9 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VMP1Q96GC9 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.51■□□□□ 0.87
VMP1Q96GC9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VMP1Q96GC9 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
VMP1Q96GC9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.51■□□□□ 0.87
VMP1Q96GC9 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.51■□□□□ 0.87
VMP1Q96GC9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VMP1Q96GC9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VMP1Q96GC9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VMP1Q96GC9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.5■□□□□ 0.87
VMP1Q96GC9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
VMP1Q96GC9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
VMP1Q96GC9 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VMP1Q96GC9 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
VMP1Q96GC9 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VMP1Q96GC9 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VMP1Q96GC9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.5■□□□□ 0.87
VMP1Q96GC9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.5■□□□□ 0.87
VMP1Q96GC9 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VMP1Q96GC9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VMP1Q96GC9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.5■□□□□ 0.87
VMP1Q96GC9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VMP1Q96GC9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
VMP1Q96GC9 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VMP1Q96GC9 ZNRF2P3-201ENST00000424200 374 ntBASIC20.49■□□□□ 0.87
VMP1Q96GC9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VMP1Q96GC9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 PKD1P6-201ENST00000343738 4769 ntBASIC20.49■□□□□ 0.87
VMP1Q96GC9 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.49■□□□□ 0.87
VMP1Q96GC9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VMP1Q96GC9 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VMP1Q96GC9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VMP1Q96GC9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
VMP1Q96GC9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VMP1Q96GC9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VMP1Q96GC9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VMP1Q96GC9 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VMP1Q96GC9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VMP1Q96GC9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VMP1Q96GC9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 AP005435.1-201ENST00000529293 1178 ntBASIC20.47■□□□□ 0.87
VMP1Q96GC9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VMP1Q96GC9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
VMP1Q96GC9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VMP1Q96GC9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VMP1Q96GC9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
VMP1Q96GC9 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.46■□□□□ 0.87
VMP1Q96GC9 IGHV3-19-201ENST00000521488 291 ntBASIC20.46■□□□□ 0.87
VMP1Q96GC9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
VMP1Q96GC9 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VMP1Q96GC9 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
VMP1Q96GC9 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms