Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.1■□□□□ 0.81
CLIP4Q8N3C7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
CLIP4Q8N3C7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 AC092667.1-201ENST00000434301 2586 ntBASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 MIR3181-201ENST00000578512 73 ntBASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLIP4Q8N3C7 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLIP4Q8N3C7 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CLIP4Q8N3C7 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CLIP4Q8N3C7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.08■□□□□ 0.81
CLIP4Q8N3C7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.08■□□□□ 0.81
CLIP4Q8N3C7 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.08■□□□□ 0.81
CLIP4Q8N3C7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLIP4Q8N3C7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLIP4Q8N3C7 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLIP4Q8N3C7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.08■□□□□ 0.8
CLIP4Q8N3C7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.08■□□□□ 0.8
CLIP4Q8N3C7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 SRD5A1P1-201ENST00000442297 786 ntBASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 AC073130.3-201ENST00000624389 2278 ntBASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CLIP4Q8N3C7 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 FBXW4P1-201ENST00000426721 2239 ntBASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLIP4Q8N3C7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 AL031602.1-201ENST00000633169 911 ntBASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CLIP4Q8N3C7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 MIR4466-201ENST00000606121 54 ntBASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CLIP4Q8N3C7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms