Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USP48Q86UV5 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
USP48Q86UV5 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC26.41■■□□□ 1.82
USP48Q86UV5 EI24-213ENST00000618552 1747 ntTSL 5 BASIC26.41■■□□□ 1.82
USP48Q86UV5 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP48Q86UV5 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC26.41■■□□□ 1.82
USP48Q86UV5 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
USP48Q86UV5 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
USP48Q86UV5 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC26.4■■□□□ 1.82
USP48Q86UV5 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP48Q86UV5 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP48Q86UV5 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP48Q86UV5 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP48Q86UV5 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
USP48Q86UV5 TESC-206ENST00000541210 936 ntTSL 3 BASIC26.4■■□□□ 1.82
USP48Q86UV5 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
USP48Q86UV5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USP48Q86UV5 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC26.39■■□□□ 1.82
USP48Q86UV5 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USP48Q86UV5 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC26.39■■□□□ 1.82
USP48Q86UV5 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC26.39■■□□□ 1.82
USP48Q86UV5 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
USP48Q86UV5 AC142086.2-201ENST00000569753 217 ntBASIC26.39■■□□□ 1.82
USP48Q86UV5 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USP48Q86UV5 MDK-213ENST00000617138 635 ntTSL 2 BASIC26.39■■□□□ 1.82
USP48Q86UV5 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.81
USP48Q86UV5 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC26.39■■□□□ 1.81
USP48Q86UV5 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
USP48Q86UV5 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
USP48Q86UV5 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
USP48Q86UV5 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP48Q86UV5 DUSP8P3-201ENST00000399571 1760 ntBASIC26.38■■□□□ 1.81
USP48Q86UV5 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC26.38■■□□□ 1.81
USP48Q86UV5 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP48Q86UV5 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP48Q86UV5 KRT18P11-201ENST00000435214 1283 ntBASIC26.38■■□□□ 1.81
USP48Q86UV5 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USP48Q86UV5 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC26.38■■□□□ 1.81
USP48Q86UV5 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP48Q86UV5 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC26.38■■□□□ 1.81
USP48Q86UV5 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
USP48Q86UV5 C1orf229-201ENST00000623686 2258 ntBASIC26.37■■□□□ 1.81
USP48Q86UV5 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
USP48Q86UV5 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP48Q86UV5 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP48Q86UV5 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC26.37■■□□□ 1.81
USP48Q86UV5 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC26.37■■□□□ 1.81
USP48Q86UV5 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC26.37■■□□□ 1.81
USP48Q86UV5 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC26.37■■□□□ 1.81
USP48Q86UV5 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP48Q86UV5 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP48Q86UV5 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
USP48Q86UV5 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
USP48Q86UV5 STK25-234ENST00000535007 2459 ntTSL 2 BASIC26.37■■□□□ 1.81
USP48Q86UV5 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP48Q86UV5 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC26.37■■□□□ 1.81
USP48Q86UV5 AC092068.2-201ENST00000590491 1708 ntBASIC26.36■■□□□ 1.81
USP48Q86UV5 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP48Q86UV5 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP48Q86UV5 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP48Q86UV5 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP48Q86UV5 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP48Q86UV5 KRT18P6-201ENST00000555540 1265 ntBASIC26.36■■□□□ 1.81
USP48Q86UV5 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC26.36■■□□□ 1.81
USP48Q86UV5 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC26.36■■□□□ 1.81
USP48Q86UV5 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP48Q86UV5 LINC01529-204ENST00000636474 1715 ntBASIC26.36■■□□□ 1.81
USP48Q86UV5 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP48Q86UV5 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP48Q86UV5 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP48Q86UV5 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP48Q86UV5 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP48Q86UV5 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
USP48Q86UV5 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC26.35■■□□□ 1.81
USP48Q86UV5 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC26.35■■□□□ 1.81
USP48Q86UV5 AC083906.2-201ENST00000511578 360 ntBASIC26.35■■□□□ 1.81
USP48Q86UV5 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC26.35■■□□□ 1.81
USP48Q86UV5 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP48Q86UV5 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC26.34■■□□□ 1.81
USP48Q86UV5 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
USP48Q86UV5 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC26.34■■□□□ 1.81
USP48Q86UV5 KLF13-207ENST00000560473 489 ntTSL 3 BASIC26.34■■□□□ 1.81
USP48Q86UV5 AL121832.2-201ENST00000610979 668 ntBASIC26.34■■□□□ 1.81
USP48Q86UV5 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC26.34■■□□□ 1.81
USP48Q86UV5 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
USP48Q86UV5 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC26.34■■□□□ 1.81
USP48Q86UV5 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC26.34■■□□□ 1.81
USP48Q86UV5 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP48Q86UV5 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.81
USP48Q86UV5 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms