Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 AP005435.1-201ENST00000529293 1178 ntBASIC21.51■■□□□ 1.03
LDB1Q86U70 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.51■■□□□ 1.03
LDB1Q86U70 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LDB1Q86U70 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LDB1Q86U70 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
LDB1Q86U70 AC233992.3-201ENST00000607491 485 ntBASIC21.51■■□□□ 1.03
LDB1Q86U70 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDB1Q86U70 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.51■■□□□ 1.03
LDB1Q86U70 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LDB1Q86U70 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDB1Q86U70 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
LDB1Q86U70 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDB1Q86U70 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 AC007375.3-201ENST00000600936 2314 ntBASIC21.5■■□□□ 1.03
LDB1Q86U70 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
LDB1Q86U70 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.5■■□□□ 1.03
LDB1Q86U70 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDB1Q86U70 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LDB1Q86U70 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.49■■□□□ 1.03
LDB1Q86U70 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDB1Q86U70 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDB1Q86U70 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDB1Q86U70 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.49■■□□□ 1.03
LDB1Q86U70 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
LDB1Q86U70 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
LDB1Q86U70 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.49■■□□□ 1.03
LDB1Q86U70 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.49■■□□□ 1.03
LDB1Q86U70 AC126544.1-201ENST00000580842 1059 ntBASIC21.49■■□□□ 1.03
LDB1Q86U70 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.49■■□□□ 1.03
LDB1Q86U70 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.49■■□□□ 1.03
LDB1Q86U70 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDB1Q86U70 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.49■■□□□ 1.03
LDB1Q86U70 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LDB1Q86U70 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.49■■□□□ 1.03
LDB1Q86U70 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LDB1Q86U70 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
LDB1Q86U70 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB1Q86U70 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB1Q86U70 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB1Q86U70 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.48■■□□□ 1.03
LDB1Q86U70 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
LDB1Q86U70 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.48■■□□□ 1.03
LDB1Q86U70 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB1Q86U70 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LDB1Q86U70 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB1Q86U70 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.48■■□□□ 1.03
LDB1Q86U70 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.48■■□□□ 1.03
LDB1Q86U70 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LDB1Q86U70 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
LDB1Q86U70 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LDB1Q86U70 AC099791.1-201ENST00000416440 715 ntBASIC21.47■■□□□ 1.03
LDB1Q86U70 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LDB1Q86U70 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LDB1Q86U70 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
LDB1Q86U70 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LDB1Q86U70 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.47■■□□□ 1.03
LDB1Q86U70 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LDB1Q86U70 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDB1Q86U70 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.46■■□□□ 1.03
LDB1Q86U70 AP001330.3-201ENST00000520123 633 ntBASIC21.46■■□□□ 1.03
LDB1Q86U70 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.46■■□□□ 1.03
LDB1Q86U70 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LDB1Q86U70 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDB1Q86U70 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
LDB1Q86U70 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LDB1Q86U70 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.45■■□□□ 1.03
LDB1Q86U70 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.45■■□□□ 1.02
LDB1Q86U70 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.45■■□□□ 1.02
LDB1Q86U70 AL031432.3-201ENST00000607698 485 ntBASIC21.45■■□□□ 1.02
LDB1Q86U70 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDB1Q86U70 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDB1Q86U70 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDB1Q86U70 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
LDB1Q86U70 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
LDB1Q86U70 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.45■■□□□ 1.02
LDB1Q86U70 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.44■■□□□ 1.02
LDB1Q86U70 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LDB1Q86U70 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.44■■□□□ 1.02
LDB1Q86U70 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LDB1Q86U70 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.44■■□□□ 1.02
LDB1Q86U70 AF213884.3-201ENST00000563833 479 ntBASIC21.44■■□□□ 1.02
LDB1Q86U70 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LDB1Q86U70 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LDB1Q86U70 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LDB1Q86U70 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.44■■□□□ 1.02
LDB1Q86U70 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LDB1Q86U70 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LDB1Q86U70 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LDB1Q86U70 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LDB1Q86U70 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms