Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SH3RF1Q7Z6J0 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 AC080038.3-201ENST00000623346 1952 ntBASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SH3RF1Q7Z6J0 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 PPP1R14BP3-201ENST00000509033 445 ntBASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC24.76■■□□□ 1.55
SH3RF1Q7Z6J0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 AC016769.1-201ENST00000409132 1010 ntBASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 AC137761.2-201ENST00000561729 223 ntBASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 AC145350.3-201ENST00000569033 163 ntBASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.75■■□□□ 1.55
SH3RF1Q7Z6J0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SH3RF1Q7Z6J0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 AC026185.1-201ENST00000445748 174 ntBASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SH3RF1Q7Z6J0 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 AC105233.4-201ENST00000642045 216 ntBASIC24.72■■□□□ 1.55
SH3RF1Q7Z6J0 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.72■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms