Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
RNF111Q6ZNA4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF111Q6ZNA4 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF111Q6ZNA4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF111Q6ZNA4 AC144652.1-201ENST00000609974 1624 ntBASIC20.86■□□□□ 0.93
RNF111Q6ZNA4 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 AC241377.3-202ENST00000626088 1088 ntBASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 AC241585.3-202ENST00000628937 1088 ntBASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 AC245100.8-202ENST00000629247 1058 ntBASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF111Q6ZNA4 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 AC092171.4-201ENST00000609130 632 ntBASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF111Q6ZNA4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF111Q6ZNA4 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF111Q6ZNA4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF111Q6ZNA4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.83■□□□□ 0.93
RNF111Q6ZNA4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF111Q6ZNA4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF111Q6ZNA4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
RNF111Q6ZNA4 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RNF111Q6ZNA4 FP325331.1-202ENST00000623531 1380 ntBASIC20.83■□□□□ 0.92
RNF111Q6ZNA4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RNF111Q6ZNA4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
RNF111Q6ZNA4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
RNF111Q6ZNA4 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNF111Q6ZNA4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RNF111Q6ZNA4 AC099791.2-201ENST00000605725 427 ntBASIC20.82■□□□□ 0.92
RNF111Q6ZNA4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
RNF111Q6ZNA4 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
RNF111Q6ZNA4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RNF111Q6ZNA4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
RNF111Q6ZNA4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.82■□□□□ 0.92
RNF111Q6ZNA4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 AC009086.3-201ENST00000623486 1008 ntBASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.81■□□□□ 0.92
RNF111Q6ZNA4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 AF106564.1-201ENST00000607058 2553 ntBASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 LINC01529-204ENST00000636474 1715 ntBASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.8■□□□□ 0.92
RNF111Q6ZNA4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.79■□□□□ 0.92
RNF111Q6ZNA4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF111Q6ZNA4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF111Q6ZNA4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RNF111Q6ZNA4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
RNF111Q6ZNA4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RNF111Q6ZNA4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 AC244015.2-201ENST00000616358 1861 ntBASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 DUX4L19-201ENST00000557448 1267 ntBASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 LINC01521-201ENST00000504184 1943 ntBASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
RNF111Q6ZNA4 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
RNF111Q6ZNA4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms