Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CCDC88AQ3V6T2 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CCDC88AQ3V6T2 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CCDC88AQ3V6T2 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC26.65■■□□□ 1.86
CCDC88AQ3V6T2 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC26.65■■□□□ 1.86
CCDC88AQ3V6T2 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
CCDC88AQ3V6T2 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC26.64■■□□□ 1.86
CCDC88AQ3V6T2 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC26.64■■□□□ 1.86
CCDC88AQ3V6T2 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
CCDC88AQ3V6T2 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
CCDC88AQ3V6T2 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CCDC88AQ3V6T2 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
CCDC88AQ3V6T2 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CCDC88AQ3V6T2 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CCDC88AQ3V6T2 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
CCDC88AQ3V6T2 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
CCDC88AQ3V6T2 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC26.64■■□□□ 1.85
CCDC88AQ3V6T2 BRI3-207ENST00000539286 699 ntTSL 2 BASIC26.64■■□□□ 1.85
CCDC88AQ3V6T2 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.85
CCDC88AQ3V6T2 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
CCDC88AQ3V6T2 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CCDC88AQ3V6T2 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CCDC88AQ3V6T2 PPP1R14BP2-201ENST00000426284 444 ntBASIC26.63■■□□□ 1.85
CCDC88AQ3V6T2 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC26.63■■□□□ 1.85
CCDC88AQ3V6T2 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC26.63■■□□□ 1.85
CCDC88AQ3V6T2 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 AC013268.1-206ENST00000638368 961 ntBASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 AC112229.1-201ENST00000639295 961 ntBASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 APTR-203ENST00000430801 583 ntTSL 5 BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 AC010536.3-201ENST00000620306 533 ntBASIC26.62■■□□□ 1.85
CCDC88AQ3V6T2 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 IRX5-204ENST00000560154 879 ntTSL 5 BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 AC068338.2-201ENST00000563278 1430 ntBASIC26.61■■□□□ 1.85
CCDC88AQ3V6T2 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 KRT18P20-201ENST00000548986 1279 ntBASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 AL353803.4-201ENST00000565882 1934 ntBASIC26.6■■□□□ 1.85
CCDC88AQ3V6T2 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC26.59■■□□□ 1.85
CCDC88AQ3V6T2 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC88AQ3V6T2 AC009237.3-201ENST00000393279 1427 ntBASIC26.58■■□□□ 1.85
CCDC88AQ3V6T2 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC88AQ3V6T2 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC26.58■■□□□ 1.85
CCDC88AQ3V6T2 ADM-205ENST00000528544 586 ntTSL 2 BASIC26.58■■□□□ 1.85
CCDC88AQ3V6T2 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC26.58■■□□□ 1.85
CCDC88AQ3V6T2 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC88AQ3V6T2 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC26.58■■□□□ 1.85
CCDC88AQ3V6T2 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC88AQ3V6T2 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC26.58■■□□□ 1.84
CCDC88AQ3V6T2 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 PXK-203ENST00000383715 1756 ntTSL 5 BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 SERP1-208ENST00000491660 830 ntTSL 2 BASIC26.57■■□□□ 1.84
CCDC88AQ3V6T2 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms