Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 AC137761.2-201ENST00000561729 223 ntBASIC21.41■■□□□ 1.02
LRRK1Q38SD2 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 AC145350.3-201ENST00000569033 163 ntBASIC21.41■■□□□ 1.02
LRRK1Q38SD2 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 AC068473.5-201ENST00000616428 2072 ntBASIC21.41■■□□□ 1.02
LRRK1Q38SD2 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
LRRK1Q38SD2 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRK1Q38SD2 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRK1Q38SD2 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRK1Q38SD2 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRK1Q38SD2 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LRRK1Q38SD2 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
LRRK1Q38SD2 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRK1Q38SD2 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LRRK1Q38SD2 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.39■■□□□ 1.02
LRRK1Q38SD2 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
LRRK1Q38SD2 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.39■■□□□ 1.02
LRRK1Q38SD2 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LRRK1Q38SD2 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.39■■□□□ 1.02
LRRK1Q38SD2 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
LRRK1Q38SD2 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRRK1Q38SD2 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.39■■□□□ 1.01
LRRK1Q38SD2 KRT19P1-201ENST00000405746 1186 ntBASIC21.39■■□□□ 1.01
LRRK1Q38SD2 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRRK1Q38SD2 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LRRK1Q38SD2 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
LRRK1Q38SD2 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LRRK1Q38SD2 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.36■■□□□ 1.01
LRRK1Q38SD2 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 ESRRAP2-201ENST00000418437 1549 ntBASIC21.36■■□□□ 1.01
LRRK1Q38SD2 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 AC004911.1-201ENST00000416316 871 ntBASIC21.36■■□□□ 1.01
LRRK1Q38SD2 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.36■■□□□ 1.01
LRRK1Q38SD2 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 NTF6G-201ENST00000591094 616 ntBASIC21.35■■□□□ 1.01
LRRK1Q38SD2 AL137784.2-201ENST00000607332 1000 ntBASIC21.35■■□□□ 1.01
LRRK1Q38SD2 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
LRRK1Q38SD2 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
LRRK1Q38SD2 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms