Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDH1Q08174 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.78■□□□□ 0.92
PCDH1Q08174 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.78■□□□□ 0.92
PCDH1Q08174 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDH1Q08174 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PCDH1Q08174 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PCDH1Q08174 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDH1Q08174 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDH1Q08174 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.78■□□□□ 0.92
PCDH1Q08174 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
PCDH1Q08174 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 AC010542.4-201ENST00000563151 1910 ntBASIC20.77■□□□□ 0.92
PCDH1Q08174 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.77■□□□□ 0.92
PCDH1Q08174 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 EDA-201ENST00000338901 1233 ntBASIC20.77■□□□□ 0.92
PCDH1Q08174 AC096631.2-201ENST00000436136 790 ntBASIC20.77■□□□□ 0.92
PCDH1Q08174 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.77■□□□□ 0.92
PCDH1Q08174 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.77■□□□□ 0.92
PCDH1Q08174 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.77■□□□□ 0.92
PCDH1Q08174 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.77■□□□□ 0.92
PCDH1Q08174 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.77■□□□□ 0.92
PCDH1Q08174 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
PCDH1Q08174 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PCDH1Q08174 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PCDH1Q08174 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
PCDH1Q08174 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.76■□□□□ 0.91
PCDH1Q08174 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
PCDH1Q08174 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.76■□□□□ 0.91
PCDH1Q08174 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.76■□□□□ 0.91
PCDH1Q08174 AL034346.1-201ENST00000568244 1277 ntBASIC20.76■□□□□ 0.91
PCDH1Q08174 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PCDH1Q08174 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PCDH1Q08174 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.76■□□□□ 0.91
PCDH1Q08174 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
PCDH1Q08174 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
PCDH1Q08174 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH1Q08174 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH1Q08174 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.75■□□□□ 0.91
PCDH1Q08174 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.75■□□□□ 0.91
PCDH1Q08174 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.75■□□□□ 0.91
PCDH1Q08174 AC110285.6-201ENST00000617652 491 ntBASIC20.75■□□□□ 0.91
PCDH1Q08174 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
PCDH1Q08174 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH1Q08174 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH1Q08174 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.75■□□□□ 0.91
PCDH1Q08174 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH1Q08174 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH1Q08174 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH1Q08174 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH1Q08174 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PCDH1Q08174 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH1Q08174 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH1Q08174 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDH1Q08174 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
PCDH1Q08174 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH1Q08174 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
PCDH1Q08174 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH1Q08174 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH1Q08174 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH1Q08174 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH1Q08174 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH1Q08174 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PCDH1Q08174 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.74■□□□□ 0.91
PCDH1Q08174 PBX2P1-201ENST00000493219 1291 ntBASIC20.74■□□□□ 0.91
PCDH1Q08174 IGHV3-19-201ENST00000521488 291 ntBASIC20.74■□□□□ 0.91
PCDH1Q08174 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDH1Q08174 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDH1Q08174 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.74■□□□□ 0.91
PCDH1Q08174 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.74■□□□□ 0.91
PCDH1Q08174 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.74■□□□□ 0.91
PCDH1Q08174 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.74■□□□□ 0.91
PCDH1Q08174 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH1Q08174 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDH1Q08174 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH1Q08174 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.73■□□□□ 0.91
PCDH1Q08174 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH1Q08174 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH1Q08174 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.73■□□□□ 0.91
PCDH1Q08174 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDH1Q08174 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDH1Q08174 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.73■□□□□ 0.91
PCDH1Q08174 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.73■□□□□ 0.91
PCDH1Q08174 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH1Q08174 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms