Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC14.14□□□□□ -0.15
RPL28P46779 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC14.14□□□□□ -0.15
RPL28P46779 MIR4281-201ENST00000580852 62 ntBASIC14.14□□□□□ -0.15
RPL28P46779 AL031848.2-201ENST00000607670 837 ntBASIC14.14□□□□□ -0.15
RPL28P46779 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC14.14□□□□□ -0.15
RPL28P46779 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC14.14□□□□□ -0.15
RPL28P46779 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
RPL28P46779 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC14.14□□□□□ -0.15
RPL28P46779 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
RPL28P46779 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPL28P46779 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC14.13□□□□□ -0.15
RPL28P46779 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
RPL28P46779 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RPL28P46779 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RPL28P46779 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC14.13□□□□□ -0.15
RPL28P46779 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC14.13□□□□□ -0.15
RPL28P46779 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC14.13□□□□□ -0.15
RPL28P46779 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RPL28P46779 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RPL28P46779 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
RPL28P46779 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RPL28P46779 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC14.12□□□□□ -0.15
RPL28P46779 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC14.12□□□□□ -0.15
RPL28P46779 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC14.12□□□□□ -0.15
RPL28P46779 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC14.12□□□□□ -0.15
RPL28P46779 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 TK2-216ENST00000564917 1156 ntTSL 3 BASIC14.12□□□□□ -0.15
RPL28P46779 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
RPL28P46779 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 LINC01006-201ENST00000333319 2292 ntBASIC14.12□□□□□ -0.15
RPL28P46779 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPL28P46779 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
RPL28P46779 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC14.11□□□□□ -0.15
RPL28P46779 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC14.11□□□□□ -0.15
RPL28P46779 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
RPL28P46779 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
RPL28P46779 AC103724.3-201ENST00000564481 992 ntBASIC14.11□□□□□ -0.15
RPL28P46779 LSM7-203ENST00000585409 512 ntTSL 2 BASIC14.11□□□□□ -0.15
RPL28P46779 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RPL28P46779 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RPL28P46779 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RPL28P46779 AL391422.3-201ENST00000603791 2761 ntBASIC14.11□□□□□ -0.15
RPL28P46779 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RPL28P46779 AC131274.2-201ENST00000580697 1507 ntBASIC14.1□□□□□ -0.15
RPL28P46779 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
RPL28P46779 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RPL28P46779 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC14.1□□□□□ -0.15
RPL28P46779 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC14.1□□□□□ -0.15
RPL28P46779 LBH-205ENST00000407930 756 ntTSL 2 BASIC14.1□□□□□ -0.15
RPL28P46779 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPL28P46779 AC103834.1-201ENST00000520383 144 ntBASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms