Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.83■■□□□ 1.09
MSH2P43246 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.83■■□□□ 1.09
MSH2P43246 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSH2P43246 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSH2P43246 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH2P43246 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH2P43246 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.83■■□□□ 1.09
MSH2P43246 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH2P43246 AC009299.2-201ENST00000482477 511 ntBASIC21.83■■□□□ 1.09
MSH2P43246 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
MSH2P43246 KRT125P-201ENST00000546827 989 ntBASIC21.83■■□□□ 1.09
MSH2P43246 AC092028.1-203ENST00000608262 953 ntBASIC21.83■■□□□ 1.09
MSH2P43246 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
MSH2P43246 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH2P43246 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.83■■□□□ 1.08
MSH2P43246 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
MSH2P43246 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.83■■□□□ 1.08
MSH2P43246 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
MSH2P43246 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
MSH2P43246 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
MSH2P43246 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
MSH2P43246 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.82■■□□□ 1.08
MSH2P43246 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.82■■□□□ 1.08
MSH2P43246 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH2P43246 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
MSH2P43246 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH2P43246 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH2P43246 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MSH2P43246 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.82■■□□□ 1.08
MSH2P43246 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH2P43246 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH2P43246 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH2P43246 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH2P43246 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH2P43246 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH2P43246 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH2P43246 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH2P43246 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH2P43246 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MSH2P43246 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH2P43246 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH2P43246 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH2P43246 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH2P43246 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH2P43246 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH2P43246 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH2P43246 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH2P43246 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
MSH2P43246 Z92544.1-202ENST00000571933 1220 ntBASIC21.81■■□□□ 1.08
MSH2P43246 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH2P43246 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.8■■□□□ 1.08
MSH2P43246 C17orf82-201ENST00000623772 1530 ntBASIC21.8■■□□□ 1.08
MSH2P43246 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.8■■□□□ 1.08
MSH2P43246 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
MSH2P43246 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.8■■□□□ 1.08
MSH2P43246 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
MSH2P43246 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH2P43246 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
MSH2P43246 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH2P43246 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
MSH2P43246 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.79■■□□□ 1.08
MSH2P43246 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH2P43246 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH2P43246 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH2P43246 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH2P43246 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 AC239859.2-201ENST00000444165 318 ntBASIC21.79■■□□□ 1.08
MSH2P43246 MTDHP2-201ENST00000601468 714 ntBASIC21.79■■□□□ 1.08
MSH2P43246 Z98882.1-201ENST00000622160 2253 ntBASIC21.79■■□□□ 1.08
MSH2P43246 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH2P43246 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
MSH2P43246 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
MSH2P43246 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
MSH2P43246 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.78■■□□□ 1.08
MSH2P43246 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH2P43246 MIR4787-201ENST00000607364 84 ntBASIC21.78■■□□□ 1.08
MSH2P43246 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
MSH2P43246 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH2P43246 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH2P43246 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH2P43246 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH2P43246 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH2P43246 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms