Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.52■□□□□ 0.88
MSX2P35548 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.52■□□□□ 0.88
MSX2P35548 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.52■□□□□ 0.88
MSX2P35548 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
MSX2P35548 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSX2P35548 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSX2P35548 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.52■□□□□ 0.87
MSX2P35548 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSX2P35548 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSX2P35548 RNF165-205ENST00000588679 2904 ntBASIC20.51■□□□□ 0.87
MSX2P35548 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSX2P35548 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSX2P35548 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
MSX2P35548 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.51■□□□□ 0.87
MSX2P35548 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.51■□□□□ 0.87
MSX2P35548 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.51■□□□□ 0.87
MSX2P35548 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.51■□□□□ 0.87
MSX2P35548 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.51■□□□□ 0.87
MSX2P35548 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSX2P35548 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSX2P35548 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.51■□□□□ 0.87
MSX2P35548 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSX2P35548 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSX2P35548 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.51■□□□□ 0.87
MSX2P35548 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSX2P35548 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
MSX2P35548 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSX2P35548 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.5■□□□□ 0.87
MSX2P35548 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSX2P35548 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSX2P35548 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.5■□□□□ 0.87
MSX2P35548 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSX2P35548 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.5■□□□□ 0.87
MSX2P35548 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
MSX2P35548 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSX2P35548 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSX2P35548 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.5■□□□□ 0.87
MSX2P35548 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
MSX2P35548 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.49■□□□□ 0.87
MSX2P35548 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.49■□□□□ 0.87
MSX2P35548 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.49■□□□□ 0.87
MSX2P35548 DUX4L4-201ENST00000566884 1269 ntBASIC20.49■□□□□ 0.87
MSX2P35548 AC010980.1-201ENST00000587192 1142 ntBASIC20.49■□□□□ 0.87
MSX2P35548 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.49■□□□□ 0.87
MSX2P35548 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.49■□□□□ 0.87
MSX2P35548 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.49■□□□□ 0.87
MSX2P35548 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
MSX2P35548 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
MSX2P35548 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.49■□□□□ 0.87
MSX2P35548 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSX2P35548 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSX2P35548 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSX2P35548 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSX2P35548 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.48■□□□□ 0.87
MSX2P35548 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSX2P35548 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.48■□□□□ 0.87
MSX2P35548 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSX2P35548 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSX2P35548 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSX2P35548 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSX2P35548 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MSX2P35548 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSX2P35548 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSX2P35548 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSX2P35548 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.47■□□□□ 0.87
MSX2P35548 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSX2P35548 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.47■□□□□ 0.87
MSX2P35548 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
MSX2P35548 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSX2P35548 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
MSX2P35548 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSX2P35548 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
MSX2P35548 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSX2P35548 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSX2P35548 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSX2P35548 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSX2P35548 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.46■□□□□ 0.87
MSX2P35548 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSX2P35548 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSX2P35548 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.46■□□□□ 0.87
MSX2P35548 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSX2P35548 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.87
MSX2P35548 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
MSX2P35548 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSX2P35548 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.45■□□□□ 0.86
MSX2P35548 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSX2P35548 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSX2P35548 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.45■□□□□ 0.86
MSX2P35548 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.45■□□□□ 0.86
MSX2P35548 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms