Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RORAP35398 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
RORAP35398 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.46■□□□□ 0.87
RORAP35398 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RORAP35398 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.46■□□□□ 0.87
RORAP35398 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RORAP35398 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RORAP35398 AC009237.3-201ENST00000393279 1427 ntBASIC20.45■□□□□ 0.86
RORAP35398 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RORAP35398 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RORAP35398 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RORAP35398 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RORAP35398 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RORAP35398 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.45■□□□□ 0.86
RORAP35398 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RORAP35398 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.45■□□□□ 0.86
RORAP35398 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.45■□□□□ 0.86
RORAP35398 AC079140.4-201ENST00000507448 529 ntBASIC20.45■□□□□ 0.86
RORAP35398 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.45■□□□□ 0.86
RORAP35398 AC079089.2-201ENST00000531211 1277 ntBASIC20.45■□□□□ 0.86
RORAP35398 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.45■□□□□ 0.86
RORAP35398 AC137761.2-201ENST00000561729 223 ntBASIC20.45■□□□□ 0.86
RORAP35398 AC145350.3-201ENST00000569033 163 ntBASIC20.45■□□□□ 0.86
RORAP35398 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RORAP35398 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RORAP35398 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.45■□□□□ 0.86
RORAP35398 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
RORAP35398 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RORAP35398 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RORAP35398 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RORAP35398 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.44■□□□□ 0.86
RORAP35398 KRT19P1-201ENST00000405746 1186 ntBASIC20.44■□□□□ 0.86
RORAP35398 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.44■□□□□ 0.86
RORAP35398 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.44■□□□□ 0.86
RORAP35398 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RORAP35398 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RORAP35398 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
RORAP35398 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.44■□□□□ 0.86
RORAP35398 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.44■□□□□ 0.86
RORAP35398 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
RORAP35398 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RORAP35398 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RORAP35398 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RORAP35398 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.43■□□□□ 0.86
RORAP35398 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.43■□□□□ 0.86
RORAP35398 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RORAP35398 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RORAP35398 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RORAP35398 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
RORAP35398 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RORAP35398 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.43■□□□□ 0.86
RORAP35398 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.43■□□□□ 0.86
RORAP35398 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.43■□□□□ 0.86
RORAP35398 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RORAP35398 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RORAP35398 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RORAP35398 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.43■□□□□ 0.86
RORAP35398 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
RORAP35398 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RORAP35398 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RORAP35398 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.42■□□□□ 0.86
RORAP35398 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
RORAP35398 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RORAP35398 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RORAP35398 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.42■□□□□ 0.86
RORAP35398 AC016769.1-201ENST00000409132 1010 ntBASIC20.42■□□□□ 0.86
RORAP35398 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
RORAP35398 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.42■□□□□ 0.86
RORAP35398 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RORAP35398 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RORAP35398 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RORAP35398 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RORAP35398 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
RORAP35398 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.42■□□□□ 0.86
RORAP35398 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
RORAP35398 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
RORAP35398 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RORAP35398 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RORAP35398 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
RORAP35398 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RORAP35398 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.41■□□□□ 0.86
RORAP35398 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.41■□□□□ 0.86
RORAP35398 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.41■□□□□ 0.86
RORAP35398 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.41■□□□□ 0.86
RORAP35398 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RORAP35398 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.4■□□□□ 0.86
RORAP35398 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RORAP35398 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RORAP35398 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
RORAP35398 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.4■□□□□ 0.86
RORAP35398 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.4■□□□□ 0.86
RORAP35398 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RORAP35398 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RORAP35398 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RORAP35398 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.4■□□□□ 0.86
RORAP35398 C9orf163-202ENST00000624034 2573 ntBASIC20.4■□□□□ 0.86
RORAP35398 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.4■□□□□ 0.86
RORAP35398 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.4■□□□□ 0.86
RORAP35398 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RORAP35398 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms