Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC25.35■■□□□ 1.65
SHMT1P34896 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC25.35■■□□□ 1.65
SHMT1P34896 AC011767.1-201ENST00000617410 1153 ntBASIC25.35■■□□□ 1.65
SHMT1P34896 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHMT1P34896 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
SHMT1P34896 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHMT1P34896 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC25.35■■□□□ 1.65
SHMT1P34896 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SHMT1P34896 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
SHMT1P34896 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHMT1P34896 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SHMT1P34896 KRT18P11-201ENST00000435214 1283 ntBASIC25.34■■□□□ 1.65
SHMT1P34896 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
SHMT1P34896 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC25.33■■□□□ 1.65
SHMT1P34896 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
SHMT1P34896 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.33■■□□□ 1.65
SHMT1P34896 TK2-208ENST00000545043 1120 ntTSL 2 BASIC25.33■■□□□ 1.65
SHMT1P34896 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
SHMT1P34896 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC25.33■■□□□ 1.65
SHMT1P34896 MFSD11-216ENST00000590393 1141 ntBASIC25.33■■□□□ 1.65
SHMT1P34896 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
SHMT1P34896 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SHMT1P34896 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
SHMT1P34896 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC25.32■■□□□ 1.64
SHMT1P34896 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SHMT1P34896 AC026185.1-201ENST00000445748 174 ntBASIC25.32■■□□□ 1.64
SHMT1P34896 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SHMT1P34896 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC25.32■■□□□ 1.64
SHMT1P34896 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
SHMT1P34896 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
SHMT1P34896 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC25.32■■□□□ 1.64
SHMT1P34896 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHMT1P34896 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SHMT1P34896 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHMT1P34896 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
SHMT1P34896 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHMT1P34896 CROCCP5-201ENST00000436658 830 ntBASIC25.31■■□□□ 1.64
SHMT1P34896 SERP1-208ENST00000491660 830 ntTSL 2 BASIC25.31■■□□□ 1.64
SHMT1P34896 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC25.31■■□□□ 1.64
SHMT1P34896 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC25.31■■□□□ 1.64
SHMT1P34896 AP001160.3-201ENST00000601484 763 ntBASIC25.31■■□□□ 1.64
SHMT1P34896 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.31■■□□□ 1.64
SHMT1P34896 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC25.31■■□□□ 1.64
SHMT1P34896 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHMT1P34896 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHMT1P34896 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SHMT1P34896 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC25.3■■□□□ 1.64
SHMT1P34896 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHMT1P34896 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHMT1P34896 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC25.3■■□□□ 1.64
SHMT1P34896 HLA-L-209ENST00000420110 1011 ntBASIC25.3■■□□□ 1.64
SHMT1P34896 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.3■■□□□ 1.64
SHMT1P34896 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC25.3■■□□□ 1.64
SHMT1P34896 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC25.3■■□□□ 1.64
SHMT1P34896 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC25.3■■□□□ 1.64
SHMT1P34896 AL034346.1-201ENST00000568244 1277 ntBASIC25.3■■□□□ 1.64
SHMT1P34896 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHMT1P34896 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHMT1P34896 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHMT1P34896 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SHMT1P34896 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC25.29■■□□□ 1.64
SHMT1P34896 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
SHMT1P34896 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SHMT1P34896 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SHMT1P34896 AP006587.3-201ENST00000525742 1516 ntBASIC25.29■■□□□ 1.64
SHMT1P34896 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC25.29■■□□□ 1.64
SHMT1P34896 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
SHMT1P34896 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC25.29■■□□□ 1.64
SHMT1P34896 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SHMT1P34896 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC25.29■■□□□ 1.64
SHMT1P34896 UBE2DNL-204ENST00000602536 740 ntBASIC25.29■■□□□ 1.64
SHMT1P34896 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SHMT1P34896 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SHMT1P34896 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
SHMT1P34896 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHMT1P34896 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHMT1P34896 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHMT1P34896 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC25.28■■□□□ 1.64
SHMT1P34896 AC139530.1-201ENST00000575312 1977 ntBASIC25.28■■□□□ 1.64
SHMT1P34896 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHMT1P34896 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHMT1P34896 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
SHMT1P34896 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC25.28■■□□□ 1.64
SHMT1P34896 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC25.28■■□□□ 1.64
SHMT1P34896 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC25.28■■□□□ 1.64
SHMT1P34896 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHMT1P34896 GXYLT1P5-201ENST00000614548 1189 ntBASIC25.28■■□□□ 1.64
SHMT1P34896 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
SHMT1P34896 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHMT1P34896 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHMT1P34896 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHMT1P34896 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
SHMT1P34896 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SHMT1P34896 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SHMT1P34896 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC25.27■■□□□ 1.64
SHMT1P34896 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC25.27■■□□□ 1.64
SHMT1P34896 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SHMT1P34896 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC25.27■■□□□ 1.64
SHMT1P34896 PPP1R14BP3-201ENST00000509033 445 ntBASIC25.27■■□□□ 1.64
SHMT1P34896 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms