Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
HMGB1P09429 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
HMGB1P09429 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
HMGB1P09429 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
HMGB1P09429 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.47■■□□□ 1.67
HMGB1P09429 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.47■■□□□ 1.67
HMGB1P09429 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
HMGB1P09429 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
HMGB1P09429 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
HMGB1P09429 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC25.47■■□□□ 1.67
HMGB1P09429 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC25.47■■□□□ 1.67
HMGB1P09429 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC25.47■■□□□ 1.67
HMGB1P09429 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
HMGB1P09429 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
HMGB1P09429 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC25.46■■□□□ 1.67
HMGB1P09429 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
HMGB1P09429 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
HMGB1P09429 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
HMGB1P09429 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
HMGB1P09429 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC25.46■■□□□ 1.67
HMGB1P09429 MIR939-201ENST00000401314 82 ntBASIC25.46■■□□□ 1.67
HMGB1P09429 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC25.46■■□□□ 1.67
HMGB1P09429 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC25.46■■□□□ 1.67
HMGB1P09429 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
HMGB1P09429 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
HMGB1P09429 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC25.45■■□□□ 1.67
HMGB1P09429 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
HMGB1P09429 RASA4CP-201ENST00000424092 1398 ntBASIC25.45■■□□□ 1.67
HMGB1P09429 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
HMGB1P09429 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
HMGB1P09429 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
HMGB1P09429 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC25.45■■□□□ 1.66
HMGB1P09429 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
HMGB1P09429 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
HMGB1P09429 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
HMGB1P09429 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.45■■□□□ 1.66
HMGB1P09429 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.66
HMGB1P09429 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
HMGB1P09429 AC010542.4-201ENST00000563151 1910 ntBASIC25.45■■□□□ 1.66
HMGB1P09429 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
HMGB1P09429 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
HMGB1P09429 FBXW4P1-201ENST00000426721 2239 ntBASIC25.44■■□□□ 1.66
HMGB1P09429 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
HMGB1P09429 WWC2-AS2-201ENST00000578387 2183 ntBASIC25.44■■□□□ 1.66
HMGB1P09429 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
HMGB1P09429 AC091305.1-201ENST00000479476 895 ntBASIC25.44■■□□□ 1.66
HMGB1P09429 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC25.44■■□□□ 1.66
HMGB1P09429 AL031432.3-201ENST00000607698 485 ntBASIC25.44■■□□□ 1.66
HMGB1P09429 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
HMGB1P09429 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
HMGB1P09429 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC25.44■■□□□ 1.66
HMGB1P09429 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC25.44■■□□□ 1.66
HMGB1P09429 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
HMGB1P09429 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
HMGB1P09429 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
HMGB1P09429 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
HMGB1P09429 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.43■■□□□ 1.66
HMGB1P09429 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
HMGB1P09429 SMUG1P1-201ENST00000590640 811 ntBASIC25.43■■□□□ 1.66
HMGB1P09429 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
HMGB1P09429 AL136967.2-201ENST00000623968 743 ntBASIC25.43■■□□□ 1.66
HMGB1P09429 RALB-208ENST00000631312 311 ntTSL 5 BASIC25.43■■□□□ 1.66
HMGB1P09429 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
HMGB1P09429 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
HMGB1P09429 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC25.43■■□□□ 1.66
HMGB1P09429 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 AP004607.7-201ENST00000527152 1677 ntBASIC25.42■■□□□ 1.66
HMGB1P09429 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC25.42■■□□□ 1.66
HMGB1P09429 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC25.42■■□□□ 1.66
HMGB1P09429 AF213884.3-201ENST00000563833 479 ntBASIC25.42■■□□□ 1.66
HMGB1P09429 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.42■■□□□ 1.66
HMGB1P09429 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
HMGB1P09429 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
HMGB1P09429 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
HMGB1P09429 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC25.41■■□□□ 1.66
HMGB1P09429 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
HMGB1P09429 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
HMGB1P09429 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC25.41■■□□□ 1.66
HMGB1P09429 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
HMGB1P09429 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
HMGB1P09429 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
HMGB1P09429 SUDS3P1-201ENST00000505831 966 ntBASIC25.4■■□□□ 1.66
HMGB1P09429 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
HMGB1P09429 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC25.4■■□□□ 1.66
HMGB1P09429 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC25.4■■□□□ 1.66
HMGB1P09429 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.4■■□□□ 1.66
HMGB1P09429 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
HMGB1P09429 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
HMGB1P09429 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
HMGB1P09429 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms