Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
NPHP4O75161 UNC93B5-201ENST00000530315 699 ntBASIC30.85■■■□□ 2.53
NPHP4O75161 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC30.85■■■□□ 2.53
NPHP4O75161 AC008694.1-202ENST00000636953 945 ntBASIC30.85■■■□□ 2.53
NPHP4O75161 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
NPHP4O75161 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC30.85■■■□□ 2.53
NPHP4O75161 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP4O75161 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
NPHP4O75161 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC30.84■■■□□ 2.53
NPHP4O75161 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP4O75161 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP4O75161 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP4O75161 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP4O75161 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC30.84■■■□□ 2.53
NPHP4O75161 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP4O75161 ECEL1P3-201ENST00000427961 737 ntBASIC30.83■■■□□ 2.53
NPHP4O75161 AP003097.1-201ENST00000530657 1135 ntBASIC30.83■■■□□ 2.53
NPHP4O75161 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC30.83■■■□□ 2.53
NPHP4O75161 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
NPHP4O75161 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
NPHP4O75161 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
NPHP4O75161 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP4O75161 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP4O75161 NAA20-201ENST00000310450 920 ntTSL 2 BASIC30.82■■■□□ 2.52
NPHP4O75161 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
NPHP4O75161 FAM210CP-201ENST00000445714 574 ntBASIC30.82■■■□□ 2.52
NPHP4O75161 MME-217ENST00000616757 1315 ntTSL 5 BASIC30.82■■■□□ 2.52
NPHP4O75161 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP4O75161 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC30.82■■■□□ 2.52
NPHP4O75161 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP4O75161 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP4O75161 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
NPHP4O75161 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC30.81■■■□□ 2.52
NPHP4O75161 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC30.81■■■□□ 2.52
NPHP4O75161 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC30.81■■■□□ 2.52
NPHP4O75161 AC073912.3-201ENST00000624414 853 ntBASIC30.81■■■□□ 2.52
NPHP4O75161 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC30.81■■■□□ 2.52
NPHP4O75161 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
NPHP4O75161 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
NPHP4O75161 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
NPHP4O75161 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC30.81■■■□□ 2.52
NPHP4O75161 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP4O75161 DUSP8P3-201ENST00000399571 1760 ntBASIC30.8■■■□□ 2.52
NPHP4O75161 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP4O75161 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC30.8■■■□□ 2.52
NPHP4O75161 ISCU-212ENST00000547005 795 ntTSL 3 BASIC30.8■■■□□ 2.52
NPHP4O75161 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP4O75161 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP4O75161 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC30.79■■■□□ 2.52
NPHP4O75161 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP4O75161 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP4O75161 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
NPHP4O75161 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC30.79■■■□□ 2.52
NPHP4O75161 AC010331.1-201ENST00000611423 582 ntBASIC30.79■■■□□ 2.52
NPHP4O75161 AL359736.2-201ENST00000621992 437 ntBASIC30.79■■■□□ 2.52
NPHP4O75161 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
NPHP4O75161 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC30.78■■■□□ 2.52
NPHP4O75161 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
NPHP4O75161 UBE2SP1-201ENST00000450587 669 ntBASIC30.78■■■□□ 2.52
NPHP4O75161 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC30.78■■■□□ 2.52
NPHP4O75161 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC30.78■■■□□ 2.52
NPHP4O75161 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC30.78■■■□□ 2.52
NPHP4O75161 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
NPHP4O75161 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
NPHP4O75161 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC30.77■■■□□ 2.52
NPHP4O75161 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC30.77■■■□□ 2.52
NPHP4O75161 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC30.77■■■□□ 2.52
NPHP4O75161 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
NPHP4O75161 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
NPHP4O75161 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC30.77■■■□□ 2.52
NPHP4O75161 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
NPHP4O75161 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC30.76■■■□□ 2.52
NPHP4O75161 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
NPHP4O75161 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.52
NPHP4O75161 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
NPHP4O75161 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
NPHP4O75161 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
NPHP4O75161 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC30.76■■■□□ 2.51
NPHP4O75161 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC30.76■■■□□ 2.51
NPHP4O75161 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC30.76■■■□□ 2.51
NPHP4O75161 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC30.76■■■□□ 2.51
NPHP4O75161 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP4O75161 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP4O75161 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP4O75161 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP4O75161 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC30.75■■■□□ 2.51
NPHP4O75161 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC30.75■■■□□ 2.51
NPHP4O75161 AL353803.4-201ENST00000565882 1934 ntBASIC30.75■■■□□ 2.51
NPHP4O75161 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP4O75161 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP4O75161 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP4O75161 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP4O75161 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC30.74■■■□□ 2.51
NPHP4O75161 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP4O75161 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP4O75161 FXN-202ENST00000396364 980 ntTSL 5 BASIC30.74■■■□□ 2.51
NPHP4O75161 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC30.74■■■□□ 2.51
NPHP4O75161 MAX-217ENST00000557277 728 ntTSL 3 BASIC30.74■■■□□ 2.51
NPHP4O75161 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC30.74■■■□□ 2.51
NPHP4O75161 MIR4497-201ENST00000583208 89 ntBASIC30.74■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms