Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
TRIM13O60858 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM13O60858 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.18■□□□□ 0.98
TRIM13O60858 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM13O60858 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
TRIM13O60858 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM13O60858 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM13O60858 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
TRIM13O60858 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM13O60858 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM13O60858 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM13O60858 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM13O60858 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM13O60858 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM13O60858 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM13O60858 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM13O60858 AC241377.3-202ENST00000626088 1088 ntBASIC21.17■□□□□ 0.98
TRIM13O60858 AC241585.3-202ENST00000628937 1088 ntBASIC21.17■□□□□ 0.98
TRIM13O60858 AC245100.8-202ENST00000629247 1058 ntBASIC21.17■□□□□ 0.98
TRIM13O60858 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRIM13O60858 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
TRIM13O60858 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM13O60858 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.17■□□□□ 0.98
TRIM13O60858 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
TRIM13O60858 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM13O60858 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM13O60858 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM13O60858 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM13O60858 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM13O60858 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM13O60858 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM13O60858 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM13O60858 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
TRIM13O60858 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM13O60858 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
TRIM13O60858 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM13O60858 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM13O60858 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM13O60858 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM13O60858 AF106564.1-201ENST00000607058 2553 ntBASIC21.15■□□□□ 0.98
TRIM13O60858 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
TRIM13O60858 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM13O60858 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM13O60858 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM13O60858 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
TRIM13O60858 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM13O60858 AC026471.6-201ENST00000622954 1905 ntBASIC21.15■□□□□ 0.98
TRIM13O60858 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM13O60858 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM13O60858 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TRIM13O60858 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TRIM13O60858 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM13O60858 AC133637.1-201ENST00000624115 1537 ntBASIC21.14■□□□□ 0.98
TRIM13O60858 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM13O60858 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
TRIM13O60858 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.14■□□□□ 0.98
TRIM13O60858 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM13O60858 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.14■□□□□ 0.97
TRIM13O60858 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM13O60858 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
TRIM13O60858 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM13O60858 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.14■□□□□ 0.97
TRIM13O60858 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM13O60858 AL451085.2-201ENST00000605085 799 ntBASIC21.14■□□□□ 0.97
TRIM13O60858 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM13O60858 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM13O60858 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.14■□□□□ 0.97
TRIM13O60858 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.14■□□□□ 0.97
TRIM13O60858 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM13O60858 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM13O60858 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM13O60858 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.13■□□□□ 0.97
TRIM13O60858 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM13O60858 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM13O60858 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM13O60858 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.13■□□□□ 0.97
TRIM13O60858 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
TRIM13O60858 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM13O60858 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM13O60858 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
TRIM13O60858 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.13■□□□□ 0.97
TRIM13O60858 OR7E47P-201ENST00000546390 1422 ntBASIC21.12■□□□□ 0.97
TRIM13O60858 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM13O60858 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
TRIM13O60858 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM13O60858 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM13O60858 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
TRIM13O60858 AC104564.3-201ENST00000582367 638 ntBASIC21.12■□□□□ 0.97
TRIM13O60858 MIR6724-1-201ENST00000616420 92 ntBASIC21.12■□□□□ 0.97
TRIM13O60858 MIR6724-2-201ENST00000616483 92 ntBASIC21.12■□□□□ 0.97
TRIM13O60858 MIR6724-4-201ENST00000617390 92 ntBASIC21.12■□□□□ 0.97
TRIM13O60858 MIR6724-3-201ENST00000622482 92 ntBASIC21.12■□□□□ 0.97
TRIM13O60858 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM13O60858 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
TRIM13O60858 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM13O60858 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM13O60858 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM13O60858 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM13O60858 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM13O60858 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 254 ms